EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0033748 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 11701 bases
Position: chr8:83650904-83662604
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0089619	ResIII	PF04851.15	3.1e-05	1	1
MGP_AKRJ_P0089622	ResIII	PF04851.15	3.1e-05	1	1
MGP_AKRJ_P0089623	ResIII	PF04851.15	3.1e-05	1	1
MGP_AKRJ_P0089619	DEAD	PF00270.29	4.1e-38	1	1
MGP_AKRJ_P0089622	DEAD	PF00270.29	4.1e-38	1	1
MGP_AKRJ_P0089623	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0089624	-	754	-	-	- (aa)	-	-
MGP_AKRJ_T0089620	-	1927	-	-	- (aa)	-	-
MGP_AKRJ_T0089621	-	1551	-	MGP_AKRJ_P0089621	208 (aa)	-	-
MGP_AKRJ_T0089622	-	3858	-	MGP_AKRJ_P0089622	427 (aa)	-	-
MGP_AKRJ_T0089623	-	1794	-	MGP_AKRJ_P0089623	427 (aa)	-	-
MGP_AKRJ_T0089619	-	1656	XM_006531332	MGP_AKRJ_P0089619	427 (aa)	XP_006531395	Q8VDW0

Gene Model

Click here to download MGP_AKRJ_G0033748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0033748's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0033748	Ddx39	90	30.392	MGP_AKRJ_G0016865	D1Pas1	57	31.565
MGP_AKRJ_G0033748	Ddx39	74	34.969	MGP_AKRJ_G0017955	Ddx56	61	32.051
MGP_AKRJ_G0033748	Ddx39	90	31.343	MGP_AKRJ_G0034039	Ddx19b	81	31.343
MGP_AKRJ_G0033748	Ddx39	90	30.657	MGP_AKRJ_G0034038	Ddx19a	82	30.657
MGP_AKRJ_G0033748	Ddx39	87	33.156	MGP_AKRJ_G0033607	Ddx49	98	32.493
MGP_AKRJ_G0033748	Ddx39	85	31.183	MGP_AKRJ_G0034440	Ddx25	81	31.328
MGP_AKRJ_G0033748	Ddx39	90	34.074	MGP_AKRJ_G0027643	Ddx20	50	34.140
MGP_AKRJ_G0033748	Ddx39	86	38.108	MGP_AKRJ_G0022614	Eif4a2	90	38.108
MGP_AKRJ_G0033748	Ddx39	86	37.197	MGP_AKRJ_G0019416	Eif4a3	89	37.197
MGP_AKRJ_G0033748	Ddx39	81	30.312	MGP_AKRJ_G0016360	Ddx18	51	30.769
MGP_AKRJ_G0033748	Ddx39	90	36.010	MGP_AKRJ_G0018483	Eif4a1	94	36.010
MGP_AKRJ_G0033748	Ddx39	89	32.620	MGP_AKRJ_G0031315	Ddx47	90	32.095
MGP_AKRJ_G0033748	Ddx39	100	90.888	MGP_AKRJ_G0023561	Ddx39b	100	90.888