EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_AKRJ_G0035138 (Gene tree)
Gene ID: -
Gene Symbol: Poc1a
Alias: 2510040D07Rik|Wdr51a|cha
Full Name: POC1 centriolar protein A
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Plus strand
Length: 69144 bases
Position: chr9:106773003-106842146
Accession: 1917485
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0094139	eIF2A	PF08662.11	2.2e-10	1	1
MGP_AKRJ_P0094138	eIF2A	PF08662.11	3.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0094140	-	1539	-	-	- (aa)	-	-
MGP_AKRJ_T0094142	-	526	-	-	- (aa)	-	-
MGP_AKRJ_T0094141	-	727	-	-	- (aa)	-	-
MGP_AKRJ_T0094138	-	1695	XM_006511831	MGP_AKRJ_P0094138	405 (aa)	XP_006511894	Q8JZX3
MGP_AKRJ_T0094139	-	1242	-	MGP_AKRJ_P0094139	356 (aa)	-	-

Gene Model

Click here to download MGP_AKRJ_G0035138's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_AKRJ_G0035138's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0035138	Poc1a	82	32.636	MGP_AKRJ_G0020790	Utp15	52	32.636
MGP_AKRJ_G0035138	Poc1a	82	30.000	MGP_AKRJ_G0028261	Prpf4	56	30.000
MGP_AKRJ_G0035138	Poc1a	80	38.000	MGP_AKRJ_G0026392	Ciao1	85	38.000
MGP_AKRJ_G0035138	Poc1a	93	33.333	MGP_AKRJ_G0027590	Wdr3	58	33.333
MGP_AKRJ_G0035138	Poc1a	80	30.037	MGP_AKRJ_G0024804	Prpf19	55	30.037
MGP_AKRJ_G0035138	Poc1a	81	32.941	MGP_AKRJ_G0034739	Wdr61	97	32.161
MGP_AKRJ_G0035138	Poc1a	83	35.714	MGP_AKRJ_G0025462	Wdr5	99	30.973