EuRBPDB

Description

Ensembl ID: MGP_AKRJ_G0035587 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_akrj
Status: putative
Strand: Minus strand
Length: 78182 bases
Position: chrX:43971892-44050073
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_AKRJ_P0096039	ResIII	PF04851.15	4.3e-12	1	1
MGP_AKRJ_P0096038	ResIII	PF04851.15	1.1e-11	1	1
MGP_AKRJ_P0096036	ResIII	PF04851.15	1.8e-11	1	1
MGP_AKRJ_P0096035	ResIII	PF04851.15	1.8e-11	1	1
MGP_AKRJ_P0096037	ResIII	PF04851.15	1.8e-11	1	1
MGP_AKRJ_P0096035	DEAD	PF00270.29	1.2e-06	1	1
MGP_AKRJ_P0096037	DEAD	PF00270.29	1.2e-06	1	1
MGP_AKRJ_P0096036	DEAD	PF00270.29	1.3e-06	1	1
MGP_AKRJ_P0096039	DEAD	PF00270.29	2.4e-06	1	1
MGP_AKRJ_P0096038	DEAD	PF00270.29	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_AKRJ_T0096039	-	1965	-	MGP_AKRJ_P0096039	381 (aa)	-	-
MGP_AKRJ_T0096038	-	2304	-	MGP_AKRJ_P0096038	768 (aa)	-	-
MGP_AKRJ_T0096035	-	4024	XM_006541563	MGP_AKRJ_P0096035	1046 (aa)	XP_006541626	Q6PGB8
MGP_AKRJ_T0096037	-	4798	-	MGP_AKRJ_P0096037	1046 (aa)	-	-
MGP_AKRJ_T0096036	-	3991	-	MGP_AKRJ_P0096036	1062 (aa)	-	-
MGP_AKRJ_T0096040	-	360	-	MGP_AKRJ_P0096040	117 (aa)	-	-
MGP_AKRJ_T0096041	-	409	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_AKRJ_G0035587	Smarca1	61	32.031	MGP_AKRJ_G0028529	Rad54l	66	33.267
MGP_AKRJ_G0035587	Smarca1	72	45.247	MGP_AKRJ_G0025040	Hells	65	47.410
MGP_AKRJ_G0035587	Smarca1	75	42.044	MGP_AKRJ_G0027570	Chd1l	62	43.419
MGP_AKRJ_G0035587	Smarca1	72	30.782	MGP_AKRJ_G0027977	Rad54b	66	31.395
MGP_AKRJ_G0035587	Smarca1	71	30.490	MGP_AKRJ_G0020602	Ercc6l2	82	30.353