EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0017426 (Gene tree)
Gene ID: -
Gene Symbol: Cirbp
Alias: Cirp|R74941
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 7368 bases
Position: chr10:78151241-78158608
Accession: 893588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0026149	RRM_1	PF00076.22	5e-26	1	1
MGP_BALBcJ_P0026151	RRM_1	PF00076.22	1.2e-25	1	1
MGP_BALBcJ_P0026150	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0026155	-	593	-	-	- (aa)	-	-
MGP_BALBcJ_T0026154	-	894	-	-	- (aa)	-	-
MGP_BALBcJ_T0026149	-	423	XM_006513164	MGP_BALBcJ_P0026149	108 (aa)	XP_006513227	P60824
MGP_BALBcJ_T0026151	-	836	-	MGP_BALBcJ_P0026151	168 (aa)	-	-
MGP_BALBcJ_T0026150	-	1321	-	MGP_BALBcJ_P0026150	172 (aa)	-	-
MGP_BALBcJ_T0026153	-	912	-	-	- (aa)	-	-
MGP_BALBcJ_T0026152	-	376	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0017426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0017426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0017426	Cirbp	85	40.244	MGP_BALBcJ_G0033066	Tial1	67	40.244
MGP_BALBcJ_G0017426	Cirbp	87	40.351	MGP_BALBcJ_G0029944	Msi1	51	38.983
MGP_BALBcJ_G0017426	Cirbp	88	43.243	MGP_BALBcJ_G0018865	Msi2	61	41.429
MGP_BALBcJ_G0017426	Cirbp	99	60.588	MGP_BALBcJ_G0035515	Rbm3	100	63.529
MGP_BALBcJ_G0017426	Cirbp	94	38.614	MGP_BALBcJ_G0020577	Hnrnpa0	57	43.421
MGP_BALBcJ_G0017426	Cirbp	91	36.634	MGP_BALBcJ_G0028933	-	90	36.634
MGP_BALBcJ_G0017426	Cirbp	76	37.500	MGP_BALBcJ_G0028426	Elavl2	64	37.500
MGP_BALBcJ_G0017426	Cirbp	91	35.714	MGP_BALBcJ_G0030954	Tia1	80	37.778
MGP_BALBcJ_G0017426	Cirbp	70	44.737	MGP_BALBcJ_G0030715	Hnrnpa2b1	50	44.737
MGP_BALBcJ_G0017426	Cirbp	82	33.333	MGP_BALBcJ_G0033314	Elavl1	75	33.333
MGP_BALBcJ_G0017426	Cirbp	92	42.105	MGP_BALBcJ_G0017432	Dazap1	74	47.273
MGP_BALBcJ_G0017426	Cirbp	79	37.500	MGP_BALBcJ_G0034443	Elavl3	62	37.500
MGP_BALBcJ_G0017426	Cirbp	83	37.113	MGP_BALBcJ_G0029756	Hnrnpd	68	37.931
MGP_BALBcJ_G0017426	Cirbp	91	39.759	MGP_BALBcJ_G0026809	Pabpc1l	53	39.759
MGP_BALBcJ_G0017426	Cirbp	94	54.783	MGP_BALBcJ_G0033782	-	57	54.545
MGP_BALBcJ_G0017426	Cirbp	78	40.476	MGP_BALBcJ_G0026928	Rbm38	74	38.043
MGP_BALBcJ_G0017426	Cirbp	85	38.043	MGP_BALBcJ_G0022692	Ncbp2	54	36.471
MGP_BALBcJ_G0017426	Cirbp	81	32.955	MGP_BALBcJ_G0023419	Srsf3	67	32.955
MGP_BALBcJ_G0017426	Cirbp	73	36.709	MGP_BALBcJ_G0029758	Hnrnpdl	54	36.709
MGP_BALBcJ_G0017426	Cirbp	80	32.558	MGP_BALBcJ_G0025305	Celf2	82	33.333
MGP_BALBcJ_G0017426	Cirbp	84	31.868	MGP_BALBcJ_G0026788	Srsf6	61	31.868
MGP_BALBcJ_G0017426	Cirbp	68	34.247	MGP_BALBcJ_G0021359	Pspc1	69	41.304
MGP_BALBcJ_G0017426	Cirbp	79	63.529	MGP_BALBcJ_G0035718	Rbmx	83	63.529
MGP_BALBcJ_G0017426	Cirbp	84	38.889	MGP_BALBcJ_G0028558	Elavl4	70	38.889