EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0017959 (Gene tree)
Gene ID: -
Gene Symbol: Ddx56
Alias: 2600001H07Rik|D11Ertd619e|NOH61|Noh61
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 8843 bases
Position: chr11:3221857-3230699
Accession: 1277172
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0027917	ResIII	PF04851.15	9.5e-07	1	1
MGP_BALBcJ_P0027917	DEAD	PF00270.29	6.9e-40	1	1
MGP_BALBcJ_P0027919	DEAD	PF00270.29	5.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0027918	-	527	-	-	- (aa)	-	-
MGP_BALBcJ_T0027919	-	764	-	MGP_BALBcJ_P0027919	237 (aa)	-	-
MGP_BALBcJ_T0027917	-	1956	XM_011243731	MGP_BALBcJ_P0027917	546 (aa)	XP_011242033	Q9D0R4
MGP_BALBcJ_T0027920	-	621	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0017959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0017959's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0017959	Ddx56	61	32.051	MGP_BALBcJ_G0033815	Ddx39	74	34.969
MGP_BALBcJ_G0017959	Ddx56	99	35.887	MGP_BALBcJ_G0031394	Ddx47	86	38.889
MGP_BALBcJ_G0017959	Ddx56	66	30.366	MGP_BALBcJ_G0035542	Ddx3x	52	30.000
MGP_BALBcJ_G0017959	Ddx56	51	31.884	MGP_BALBcJ_G0034106	Ddx19b	57	33.793
MGP_BALBcJ_G0017959	Ddx56	98	33.065	MGP_BALBcJ_G0026882	Ddx27	53	31.019
MGP_BALBcJ_G0017959	Ddx56	82	50.000	MGP_BALBcJ_G0019548	Ddx1	53	50.847
MGP_BALBcJ_G0017959	Ddx56	92	33.333	MGP_BALBcJ_G0016355	Ddx18	53	30.155
MGP_BALBcJ_G0017959	Ddx56	94	32.627	MGP_BALBcJ_G0033678	Ddx49	59	33.175
MGP_BALBcJ_G0017959	Ddx56	91	30.531	MGP_BALBcJ_G0022645	Eif4a2	72	31.330
MGP_BALBcJ_G0017959	Ddx56	75	30.899	MGP_BALBcJ_G0031403	-	73	30.899
MGP_BALBcJ_G0017959	Ddx56	97	30.041	MGP_BALBcJ_G0018486	Eif4a1	87	30.051
MGP_BALBcJ_G0017959	Ddx56	80	33.493	MGP_BALBcJ_G0018803	Ddx52	61	30.597
MGP_BALBcJ_G0017959	Ddx56	66	30.789	MGP_BALBcJ_G0016858	D1Pas1	52	30.159