EuRBPDB

Description

Ensembl ID: MGP_BALBcJ_G0018187 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnph1
Alias: AI642080|E430005G16Rik|Hnrnph|Hnrph|Hnrph1|Hnrph1 {ECO:0000313|EMBL:AAH42187.2,GN ECO:0000313|MGI:MGI:1891925}
Full Name: heterogeneous nuclear ribonucleoprotein H1
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 9324 bases
Position: chr11:47930172-47939495
Accession: 1891925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0028806	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_BALBcJ_P0028807	zf-RNPHF	PF08080.12	1.3e-22	1	1
MGP_BALBcJ_P0028812	zf-RNPHF	PF08080.12	1.5e-22	1	1
MGP_BALBcJ_P0028806	RRM_1	PF00076.22	2.1e-32	1	3
MGP_BALBcJ_P0028806	RRM_1	PF00076.22	2.1e-32	2	3
MGP_BALBcJ_P0028806	RRM_1	PF00076.22	2.1e-32	3	3
MGP_BALBcJ_P0028807	RRM_1	PF00076.22	2.1e-32	1	3
MGP_BALBcJ_P0028807	RRM_1	PF00076.22	2.1e-32	2	3
MGP_BALBcJ_P0028807	RRM_1	PF00076.22	2.1e-32	3	3
MGP_BALBcJ_P0028812	RRM_1	PF00076.22	2.6e-32	1	3
MGP_BALBcJ_P0028812	RRM_1	PF00076.22	2.6e-32	2	3
MGP_BALBcJ_P0028812	RRM_1	PF00076.22	2.6e-32	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0028822	-	663	-	-	- (aa)	-	-
MGP_BALBcJ_T0028807	-	2010	-	MGP_BALBcJ_P0028807	449 (aa)	-	-
MGP_BALBcJ_T0028806	-	2212	XM_006533875	MGP_BALBcJ_P0028806	449 (aa)	XP_006533938	O35737
MGP_BALBcJ_T0028812	-	1911	-	MGP_BALBcJ_P0028812	472 (aa)	-	-
MGP_BALBcJ_T0028813	-	1116	-	-	- (aa)	-	-
MGP_BALBcJ_T0028810	-	4002	-	-	- (aa)	-	-
MGP_BALBcJ_T0028811	-	870	-	-	- (aa)	-	-
MGP_BALBcJ_T0028809	-	581	-	-	- (aa)	-	-
MGP_BALBcJ_T0028808	-	4362	-	-	- (aa)	-	-
MGP_BALBcJ_T0028814	-	860	-	-	- (aa)	-	-
MGP_BALBcJ_T0028815	-	582	-	-	- (aa)	-	-
MGP_BALBcJ_T0028819	-	804	-	-	- (aa)	-	-
MGP_BALBcJ_T0028817	-	832	-	-	- (aa)	-	-
MGP_BALBcJ_T0028816	-	1724	-	-	- (aa)	-	-
MGP_BALBcJ_T0028818	-	582	-	-	- (aa)	-	-
MGP_BALBcJ_T0028821	-	159	-	-	- (aa)	-	-
MGP_BALBcJ_T0028820	-	163	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0018187	Hnrnph1	90	60.923	MGP_BALBcJ_G0017248	Hnrnph3	99	59.673
MGP_BALBcJ_G0018187	Hnrnph1	60	64.474	MGP_BALBcJ_G0029687	Grsf1	92	65.333
MGP_BALBcJ_G0018187	Hnrnph1	60	92.701	MGP_BALBcJ_G0027017	-	68	92.701
MGP_BALBcJ_G0018187	Hnrnph1	78	33.333	MGP_BALBcJ_G0028030	-	50	33.333
MGP_BALBcJ_G0018187	Hnrnph1	78	33.333	MGP_BALBcJ_G0028031	-	50	33.333