EuRBPDB

Description

Ensembl ID: MGP_BALBcJ_G0018209 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 6746 bases
Position: chr11:49230262-49237007
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0028895	CBFNT	PF08143.11	3.2e-19	1	1
MGP_BALBcJ_P0028896	CBFNT	PF08143.11	3.7e-19	1	1
MGP_BALBcJ_P0028897	CBFNT	PF08143.11	4.2e-19	1	1
MGP_BALBcJ_P0028895	RRM_1	PF00076.22	6.4e-34	1	2
MGP_BALBcJ_P0028895	RRM_1	PF00076.22	6.4e-34	2	2
MGP_BALBcJ_P0028896	RRM_1	PF00076.22	8.5e-34	1	2
MGP_BALBcJ_P0028896	RRM_1	PF00076.22	8.5e-34	2	2
MGP_BALBcJ_P0028897	RRM_1	PF00076.22	1e-33	1	2
MGP_BALBcJ_P0028897	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0028896	-	2013	-	MGP_BALBcJ_P0028896	311 (aa)	-	-
MGP_BALBcJ_T0028897	-	1437	-	MGP_BALBcJ_P0028897	332 (aa)	-	-
MGP_BALBcJ_T0028895	-	2370	-	MGP_BALBcJ_P0028895	285 (aa)	-	Q99020

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0018209	Hnrnpab	73	52.000	MGP_BALBcJ_G0018865	Msi2	100	52.212
MGP_BALBcJ_G0018209	Hnrnpab	65	31.414	MGP_BALBcJ_G0034875	Celf6	66	32.500
MGP_BALBcJ_G0018209	Hnrnpab	57	35.882	MGP_BALBcJ_G0020577	Hnrnpa0	58	35.882
MGP_BALBcJ_G0018209	Hnrnpab	82	58.419	MGP_BALBcJ_G0029758	Hnrnpdl	89	57.292
MGP_BALBcJ_G0018209	Hnrnpab	77	71.831	MGP_BALBcJ_G0029756	Hnrnpd	97	70.616
MGP_BALBcJ_G0018209	Hnrnpab	64	37.368	MGP_BALBcJ_G0030715	Hnrnpa2b1	61	38.068
MGP_BALBcJ_G0018209	Hnrnpab	79	40.800	MGP_BALBcJ_G0029944	Msi1	58	48.052
MGP_BALBcJ_G0018209	Hnrnpab	67	40.351	MGP_BALBcJ_G0017432	Dazap1	99	40.588
MGP_BALBcJ_G0018209	Hnrnpab	82	32.099	MGP_BALBcJ_G0029110	Tardbp	86	33.146
MGP_BALBcJ_G0018209	Hnrnpab	53	33.333	MGP_BALBcJ_G0033314	Elavl1	50	33.333
MGP_BALBcJ_G0018209	Hnrnpab	51	33.846	MGP_BALBcJ_G0019925	Slirp	73	33.846
MGP_BALBcJ_G0018209	Hnrnpab	61	34.444	MGP_BALBcJ_G0025828	Hnrnpa3	62	31.034