EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0019109 (Gene tree)
Gene ID: -
Gene Symbol: Rab5c
Alias: AI326010|Rab5C|Rabl
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 23645 bases
Position: chr11:99652891-99676535
Accession: 105306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0032345	MMR_HSR1	PF01926.23	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0032348	-	441	-	MGP_BALBcJ_P0032348	34 (aa)	-	-
MGP_BALBcJ_T0032345	-	1915	XM_006532586	MGP_BALBcJ_P0032345	216 (aa)	XP_006532649	P35278
MGP_BALBcJ_T0032347	-	412	-	MGP_BALBcJ_P0032347	83 (aa)	-	-
MGP_BALBcJ_T0032346	-	1967	-	MGP_BALBcJ_P0032346	234 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0019109's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0019109's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0019109	Rab5c	100	87.500	MGP_BALBcJ_G0023849	Rab5a	100	87.500
MGP_BALBcJ_G0019109	Rab5c	73	35.625	MGP_BALBcJ_G0017287	Rab36	60	35.625
MGP_BALBcJ_G0019109	Rab5c	81	33.702	MGP_BALBcJ_G0033197	Hras	94	33.702
MGP_BALBcJ_G0019109	Rab5c	78	32.544	MGP_BALBcJ_G0031461	Kras	98	30.102
MGP_BALBcJ_G0019109	Rab5c	94	41.379	MGP_BALBcJ_G0035166	Rab6b	98	41.379
MGP_BALBcJ_G0019109	Rab5c	71	35.948	MGP_BALBcJ_G0022206	Rabl2	67	35.948
MGP_BALBcJ_G0019109	Rab5c	89	35.784	MGP_BALBcJ_G0019803	Rab15	95	35.784
MGP_BALBcJ_G0019109	Rab5c	89	44.330	MGP_BALBcJ_G0024659	Rab1b	96	44.330
MGP_BALBcJ_G0019109	Rab5c	78	42.012	MGP_BALBcJ_G0032499	Rab30	83	42.012
MGP_BALBcJ_G0019109	Rab5c	75	45.062	MGP_BALBcJ_G0024094	Rab18	78	45.062
MGP_BALBcJ_G0019109	Rab5c	89	41.089	MGP_BALBcJ_G0027373	Rab25	93	41.089
MGP_BALBcJ_G0019109	Rab5c	97	86.124	MGP_BALBcJ_G0017816	Rab5b	97	86.124
MGP_BALBcJ_G0019109	Rab5c	89	37.113	MGP_BALBcJ_G0029950	Rab35	96	37.436
MGP_BALBcJ_G0019109	Rab5c	75	47.853	MGP_BALBcJ_G0023498	Rab11b	75	47.853
MGP_BALBcJ_G0019109	Rab5c	55	31.707	MGP_BALBcJ_G0016460	Arl8a	62	31.707
MGP_BALBcJ_G0019109	Rab5c	81	31.250	MGP_BALBcJ_G0029333	Rheb	93	31.250
MGP_BALBcJ_G0019109	Rab5c	89	36.318	MGP_BALBcJ_G0035663	Rab33a	85	36.318
MGP_BALBcJ_G0019109	Rab5c	55	31.967	MGP_BALBcJ_G0031082	Arl8b	62	31.967
MGP_BALBcJ_G0019109	Rab5c	93	37.379	MGP_BALBcJ_G0027170	Rab33b	89	37.379
MGP_BALBcJ_G0019109	Rab5c	90	38.974	MGP_BALBcJ_G0028009	Rab2a	92	38.974
MGP_BALBcJ_G0019109	Rab5c	81	44.000	MGP_BALBcJ_G0032559	Rab6a	84	44.000
MGP_BALBcJ_G0019109	Rab5c	98	40.845	MGP_BALBcJ_G0019314	Rab37	95	40.845
MGP_BALBcJ_G0019109	Rab5c	86	39.785	MGP_BALBcJ_G0025624	Rab14	89	40.741
MGP_BALBcJ_G0019109	Rab5c	86	38.806	MGP_BALBcJ_G0023947	Rab12	75	36.000
MGP_BALBcJ_G0019109	Rab5c	89	35.859	MGP_BALBcJ_G0036076	Rab9b	97	35.859
MGP_BALBcJ_G0019109	Rab5c	90	47.423	MGP_BALBcJ_G0026935	Rab22a	98	47.423
MGP_BALBcJ_G0019109	Rab5c	89	31.776	MGP_BALBcJ_G0036230	Rab9	97	31.776
MGP_BALBcJ_G0019109	Rab5c	91	46.939	MGP_BALBcJ_G0023938	Rab31	98	46.939
MGP_BALBcJ_G0019109	Rab5c	81	35.227	MGP_BALBcJ_G0015840	Rab23	74	35.227
MGP_BALBcJ_G0019109	Rab5c	89	40.206	MGP_BALBcJ_G0021255	Rab2b	90	40.206
MGP_BALBcJ_G0019109	Rab5c	77	42.442	MGP_BALBcJ_G0030984	Rab7	90	49.296
MGP_BALBcJ_G0019109	Rab5c	78	32.544	MGP_BALBcJ_G0031568	Rasl2-9	77	32.544
MGP_BALBcJ_G0019109	Rab5c	90	41.262	MGP_BALBcJ_G0034916	Rab11a	88	49.630
MGP_BALBcJ_G0019109	Rab5c	89	43.590	MGP_BALBcJ_G0018005	Rab1a	95	43.590
MGP_BALBcJ_G0019109	Rab5c	73	31.875	MGP_BALBcJ_G0018708	Rab34	62	31.875
MGP_BALBcJ_G0019109	Rab5c	83	30.000	MGP_BALBcJ_G0027661	Nras	99	33.333
MGP_BALBcJ_G0019109	Rab5c	75	36.585	MGP_BALBcJ_G0035831	Rab39b	77	36.585