EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0019413 (Gene tree)
Gene ID: -
Gene Symbol: Rbfox3
Alias: D11Bwg0517e|Fox-3|Hrnbp3|NeuN|Neuna60
Full Name: RNA binding protein%2C fox-1 homolog (C. elegans) 3
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 426454 bases
Position: chr11:117738624-118165077
Accession: 106368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0033825	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_BALBcJ_P0033828	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_BALBcJ_P0033829	Fox-1_C	PF12414.8	2.3e-45	1	1
MGP_BALBcJ_P0033827	Fox-1_C	PF12414.8	2.4e-41	1	1
MGP_BALBcJ_P0033826	Fox-1_C	PF12414.8	2.5e-41	1	1
MGP_BALBcJ_P0033824	Fox-1_C	PF12414.8	2.9e-41	1	1
MGP_BALBcJ_P0033830	Fox-1_C	PF12414.8	1.6e-21	1	1
MGP_BALBcJ_P0033831	RRM_1	PF00076.22	3.1e-19	1	1
MGP_BALBcJ_P0033825	RRM_1	PF00076.22	1.5e-18	1	1
MGP_BALBcJ_P0033828	RRM_1	PF00076.22	1.5e-18	1	1
MGP_BALBcJ_P0033829	RRM_1	PF00076.22	1.7e-18	1	1
MGP_BALBcJ_P0033824	RRM_1	PF00076.22	1.9e-18	1	1
MGP_BALBcJ_P0033826	RRM_1	PF00076.22	2.1e-18	1	1
MGP_BALBcJ_P0033830	RRM_1	PF00076.22	1.9e-14	1	1
MGP_BALBcJ_P0033827	RRM_1	PF00076.22	0.0003	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0033827	-	1553	-	MGP_BALBcJ_P0033827	329 (aa)	-	-
MGP_BALBcJ_T0033826	-	3133	-	MGP_BALBcJ_P0033826	374 (aa)	-	-
MGP_BALBcJ_T0033825	-	2809	-	MGP_BALBcJ_P0033825	313 (aa)	-	-
MGP_BALBcJ_T0033824	-	3084	XM_006533722	MGP_BALBcJ_P0033824	360 (aa)	XP_006533785	Q8BIF2
MGP_BALBcJ_T0033830	-	710	-	MGP_BALBcJ_P0033830	145 (aa)	-	-
MGP_BALBcJ_T0033831	-	900	-	MGP_BALBcJ_P0033831	169 (aa)	-	-
MGP_BALBcJ_T0033832	-	301	-	-	- (aa)	-	-
MGP_BALBcJ_T0033833	-	369	-	-	- (aa)	-	-
MGP_BALBcJ_T0033829	-	2150	-	MGP_BALBcJ_P0033829	327 (aa)	-	-
MGP_BALBcJ_T0033828	-	1542	-	MGP_BALBcJ_P0033828	313 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0019413's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0019413's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0019413	Rbfox3	100	71.930	MGP_BALBcJ_G0022457	Rbfox1	91	65.123
MGP_BALBcJ_G0019413	Rbfox3	99	61.932	MGP_BALBcJ_G0021988	Rbfox2	91	61.972
MGP_BALBcJ_G0019413	Rbfox3	53	31.868	MGP_BALBcJ_G0033066	Tial1	81	31.111
MGP_BALBcJ_G0019413	Rbfox3	72	31.429	MGP_BALBcJ_G0015973	Boll	50	43.939