EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0021764 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 12980 bases
Position: chr15:33692792-33705771
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0040768	PABP	PF00658.18	8.8e-33	1	1
MGP_BALBcJ_P0040767	PABP	PF00658.18	7.5e-32	1	1
MGP_BALBcJ_P0040767	RRM_5	PF13893.6	2.4e-08	1	2
MGP_BALBcJ_P0040767	RRM_5	PF13893.6	2.4e-08	2	2
MGP_BALBcJ_P0040767	RRM_1	PF00076.22	1.4e-90	1	4
MGP_BALBcJ_P0040767	RRM_1	PF00076.22	1.4e-90	2	4
MGP_BALBcJ_P0040767	RRM_1	PF00076.22	1.4e-90	3	4
MGP_BALBcJ_P0040767	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0040768	-	503	-	MGP_BALBcJ_P0040768	117 (aa)	-	-
MGP_BALBcJ_T0040769	-	725	-	-	- (aa)	-	-
MGP_BALBcJ_T0040771	-	866	-	-	- (aa)	-	-
MGP_BALBcJ_T0040770	-	632	-	-	- (aa)	-	-
MGP_BALBcJ_T0040773	-	2757	-	-	- (aa)	-	-
MGP_BALBcJ_T0040772	-	747	-	-	- (aa)	-	-
MGP_BALBcJ_T0040767	-	2643	XM_011245339	MGP_BALBcJ_P0040767	636 (aa)	XP_011243641	P29341

Gene Model

Click here to download MGP_BALBcJ_G0021764's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0021764's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0021764	Pabpc1	58	34.667	MGP_BALBcJ_G0029975	Rbm19	62	34.667
MGP_BALBcJ_G0021764	Pabpc1	56	34.783	MGP_BALBcJ_G0033066	Tial1	94	31.008
MGP_BALBcJ_G0021764	Pabpc1	59	67.493	MGP_BALBcJ_G0027162	Pabpc4l	97	69.277
MGP_BALBcJ_G0021764	Pabpc1	58	37.349	MGP_BALBcJ_G0028426	Elavl2	89	37.349
MGP_BALBcJ_G0021764	Pabpc1	58	64.607	MGP_BALBcJ_G0036017	Pabpc5	95	64.463
MGP_BALBcJ_G0021764	Pabpc1	97	70.854	MGP_BALBcJ_G0027014	-	98	70.854
MGP_BALBcJ_G0021764	Pabpc1	56	41.358	MGP_BALBcJ_G0027577	Sf3b4	67	41.358
MGP_BALBcJ_G0021764	Pabpc1	57	38.095	MGP_BALBcJ_G0030954	Tia1	87	38.095
MGP_BALBcJ_G0021764	Pabpc1	100	80.346	MGP_BALBcJ_G0024336	Pabpc2	100	80.346
MGP_BALBcJ_G0021764	Pabpc1	58	36.145	MGP_BALBcJ_G0028558	Elavl4	88	36.145
MGP_BALBcJ_G0021764	Pabpc1	58	36.145	MGP_BALBcJ_G0034443	Elavl3	92	36.145
MGP_BALBcJ_G0021764	Pabpc1	57	32.450	MGP_BALBcJ_G0033314	Elavl1	95	32.450
MGP_BALBcJ_G0021764	Pabpc1	98	61.635	MGP_BALBcJ_G0026809	Pabpc1l	99	61.478
MGP_BALBcJ_G0021764	Pabpc1	79	93.548	MGP_BALBcJ_G0028720	Pabpc4	99	70.935
MGP_BALBcJ_G0021764	Pabpc1	99	80.186	MGP_BALBcJ_G0023107	Pabpc6	99	80.341
MGP_BALBcJ_G0021764	Pabpc1	51	34.884	MGP_BALBcJ_G0025305	Celf2	57	35.714