EuRBPDB

Description

Ensembl ID: MGP_BALBcJ_G0023570 (Gene tree)
Gene ID: -
Gene Symbol: Lsm2
Alias: D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|Sm-X5GN|SmX5|snRNP
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 4030 bases
Position: chr17:34085207-34089236
Accession: 90676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0047214	LSM	PF01423.22	1.1e-16	1	1
MGP_BALBcJ_P0047217	LSM	PF01423.22	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0047222	-	528	-	-	- (aa)	-	-
MGP_BALBcJ_T0047223	-	1066	-	-	- (aa)	-	-
MGP_BALBcJ_T0047220	-	870	-	MGP_BALBcJ_P0047220	85 (aa)	-	-
MGP_BALBcJ_T0047221	-	691	-	-	- (aa)	-	-
MGP_BALBcJ_T0047219	-	653	-	-	- (aa)	-	-
MGP_BALBcJ_T0047218	-	687	-	-	- (aa)	-	-
MGP_BALBcJ_T0047217	-	873	-	MGP_BALBcJ_P0047217	131 (aa)	-	-
MGP_BALBcJ_T0047216	-	368	-	-	- (aa)	-	-
MGP_BALBcJ_T0047215	-	521	-	-	- (aa)	-	-
MGP_BALBcJ_T0047214	-	840	-	MGP_BALBcJ_P0047214	95 (aa)	-	-
MGP_BALBcJ_T0047213	-	1586	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0023570	Lsm2	77	31.507	MGP_BALBcJ_G0028752	Lsm10	75	31.507
MGP_BALBcJ_G0023570	Lsm2	92	34.831	MGP_BALBcJ_G0033697	Lsm4	70	35.644