EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0024336 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:37037301-37039886
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0049500	PABP	PF00658.18	1.8e-21	1	1
MGP_BALBcJ_P0049500	RRM_5	PF13893.6	8.5e-10	1	2
MGP_BALBcJ_P0049500	RRM_5	PF13893.6	8.5e-10	2	2
MGP_BALBcJ_P0049500	RRM_1	PF00076.22	2.1e-86	1	4
MGP_BALBcJ_P0049500	RRM_1	PF00076.22	2.1e-86	2	4
MGP_BALBcJ_P0049500	RRM_1	PF00076.22	2.1e-86	3	4
MGP_BALBcJ_P0049500	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0049500	-	2586	-	MGP_BALBcJ_P0049500	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_BALBcJ_G0024336's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0024336's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0024336	Pabpc2	99	61.263	MGP_BALBcJ_G0028720	Pabpc4	99	61.406
MGP_BALBcJ_G0024336	Pabpc2	98	56.938	MGP_BALBcJ_G0026809	Pabpc1l	99	56.938
MGP_BALBcJ_G0024336	Pabpc2	61	64.167	MGP_BALBcJ_G0027162	Pabpc4l	95	68.098
MGP_BALBcJ_G0024336	Pabpc2	57	35.443	MGP_BALBcJ_G0030954	Tia1	95	33.835
MGP_BALBcJ_G0024336	Pabpc2	59	36.145	MGP_BALBcJ_G0028426	Elavl2	89	36.145
MGP_BALBcJ_G0024336	Pabpc2	99	69.876	MGP_BALBcJ_G0023107	Pabpc6	99	70.186
MGP_BALBcJ_G0024336	Pabpc2	56	39.506	MGP_BALBcJ_G0027577	Sf3b4	64	39.506
MGP_BALBcJ_G0024336	Pabpc2	62	60.955	MGP_BALBcJ_G0036017	Pabpc5	96	61.111
MGP_BALBcJ_G0024336	Pabpc2	61	34.940	MGP_BALBcJ_G0034443	Elavl3	90	34.940
MGP_BALBcJ_G0024336	Pabpc2	100	80.346	MGP_BALBcJ_G0021764	Pabpc1	100	80.346
MGP_BALBcJ_G0024336	Pabpc2	59	34.940	MGP_BALBcJ_G0028558	Elavl4	88	34.940
MGP_BALBcJ_G0024336	Pabpc2	98	73.563	MGP_BALBcJ_G0027014	-	99	73.563
MGP_BALBcJ_G0024336	Pabpc2	50	35.036	MGP_BALBcJ_G0033066	Tial1	92	32.500
MGP_BALBcJ_G0024336	Pabpc2	59	34.667	MGP_BALBcJ_G0029975	Rbm19	70	34.667