EuRBPDB

Description

Ensembl ID: MGP_BALBcJ_G0026735 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 36539 bases
Position: chr2:154907691-154944229
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0058685	RRM_1	PF00076.22	1.2e-41	1	2
MGP_BALBcJ_P0058685	RRM_1	PF00076.22	1.2e-41	2	2
MGP_BALBcJ_P0058686	RRM_1	PF00076.22	1.7e-41	1	2
MGP_BALBcJ_P0058686	RRM_1	PF00076.22	1.7e-41	2	2
MGP_BALBcJ_P0058687	RRM_1	PF00076.22	1.7e-41	1	2
MGP_BALBcJ_P0058687	RRM_1	PF00076.22	1.7e-41	2	2
MGP_BALBcJ_P0058691	RRM_1	PF00076.22	2.2e-22	1	1
MGP_BALBcJ_P0058692	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0058685	-	2810	XM_006498832	MGP_BALBcJ_P0058685	530 (aa)	XP_006498895	Q8VH51
MGP_BALBcJ_T0058686	-	2580	-	MGP_BALBcJ_P0058686	524 (aa)	-	-
MGP_BALBcJ_T0058687	-	2711	-	MGP_BALBcJ_P0058687	524 (aa)	-	-
MGP_BALBcJ_T0058688	-	2744	-	MGP_BALBcJ_P0058688	415 (aa)	-	-
MGP_BALBcJ_T0058689	-	2120	-	MGP_BALBcJ_P0058689	40 (aa)	-	-
MGP_BALBcJ_T0058705	-	667	-	MGP_BALBcJ_P0058705	38 (aa)	-	-
MGP_BALBcJ_T0058704	-	743	-	MGP_BALBcJ_P0058704	40 (aa)	-	-
MGP_BALBcJ_T0058707	-	699	-	MGP_BALBcJ_P0058707	40 (aa)	-	-
MGP_BALBcJ_T0058706	-	672	-	-	- (aa)	-	-
MGP_BALBcJ_T0058701	-	593	-	MGP_BALBcJ_P0058701	39 (aa)	-	-
MGP_BALBcJ_T0058700	-	707	-	MGP_BALBcJ_P0058700	40 (aa)	-	-
MGP_BALBcJ_T0058703	-	585	-	MGP_BALBcJ_P0058703	62 (aa)	-	-
MGP_BALBcJ_T0058702	-	710	-	-	- (aa)	-	-
MGP_BALBcJ_T0058709	-	715	-	-	- (aa)	-	-
MGP_BALBcJ_T0058708	-	1008	-	-	- (aa)	-	-
MGP_BALBcJ_T0058697	-	497	-	-	- (aa)	-	-
MGP_BALBcJ_T0058696	-	754	-	MGP_BALBcJ_P0058696	156 (aa)	-	-
MGP_BALBcJ_T0058695	-	1456	-	-	- (aa)	-	-
MGP_BALBcJ_T0058694	-	546	-	-	- (aa)	-	-
MGP_BALBcJ_T0058693	-	695	-	-	- (aa)	-	-
MGP_BALBcJ_T0058692	-	1090	-	MGP_BALBcJ_P0058692	273 (aa)	-	-
MGP_BALBcJ_T0058691	-	931	-	MGP_BALBcJ_P0058691	310 (aa)	-	-
MGP_BALBcJ_T0058690	-	2127	-	MGP_BALBcJ_P0058690	47 (aa)	-	-
MGP_BALBcJ_T0058699	-	685	-	-	- (aa)	-	-
MGP_BALBcJ_T0058698	-	714	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0026735	Rbm39	52	34.483	MGP_BALBcJ_G0017432	Dazap1	94	34.483