EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0026809 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1l
Alias: 1810053B01Rik|Epab|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 25375 bases
Position: chr2:162889885-162915259
Accession: 1922908
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0059048	PABP	PF00658.18	1.8e-23	1	1
MGP_BALBcJ_P0059048	RRM_5	PF13893.6	3.2e-17	1	3
MGP_BALBcJ_P0059048	RRM_5	PF13893.6	3.2e-17	2	3
MGP_BALBcJ_P0059048	RRM_5	PF13893.6	3.2e-17	3	3
MGP_BALBcJ_P0059048	RRM_1	PF00076.22	3.5e-90	1	4
MGP_BALBcJ_P0059048	RRM_1	PF00076.22	3.5e-90	2	4
MGP_BALBcJ_P0059048	RRM_1	PF00076.22	3.5e-90	3	4
MGP_BALBcJ_P0059048	RRM_1	PF00076.22	3.5e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0059049	-	617	-	-	- (aa)	-	-
MGP_BALBcJ_T0059048	-	2354	XM_006499825	MGP_BALBcJ_P0059048	607 (aa)	XP_006499888	A2A5N3
MGP_BALBcJ_T0059052	-	328	-	-	- (aa)	-	-
MGP_BALBcJ_T0059050	-	438	-	-	- (aa)	-	-
MGP_BALBcJ_T0059051	-	750	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0026809's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0026809's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0026809	Pabpc1l	99	56.938	MGP_BALBcJ_G0024336	Pabpc2	98	56.938
MGP_BALBcJ_G0026809	Pabpc1l	99	61.478	MGP_BALBcJ_G0021764	Pabpc1	98	61.635
MGP_BALBcJ_G0026809	Pabpc1l	88	68.315	MGP_BALBcJ_G0028720	Pabpc4	78	69.108
MGP_BALBcJ_G0026809	Pabpc1l	62	33.735	MGP_BALBcJ_G0028558	Elavl4	89	33.735
MGP_BALBcJ_G0026809	Pabpc1l	56	30.864	MGP_BALBcJ_G0020577	Hnrnpa0	50	31.613
MGP_BALBcJ_G0026809	Pabpc1l	99	56.467	MGP_BALBcJ_G0023107	Pabpc6	97	56.625
MGP_BALBcJ_G0026809	Pabpc1l	57	34.118	MGP_BALBcJ_G0027523	Celf3	67	32.857
MGP_BALBcJ_G0026809	Pabpc1l	97	68.362	MGP_BALBcJ_G0027014	-	96	68.362
MGP_BALBcJ_G0026809	Pabpc1l	59	60.736	MGP_BALBcJ_G0027162	Pabpc4l	95	60.736
MGP_BALBcJ_G0026809	Pabpc1l	60	35.484	MGP_BALBcJ_G0029975	Rbm19	72	36.066
MGP_BALBcJ_G0026809	Pabpc1l	64	57.022	MGP_BALBcJ_G0036017	Pabpc5	96	56.944
MGP_BALBcJ_G0026809	Pabpc1l	59	38.095	MGP_BALBcJ_G0030954	Tia1	87	38.095
MGP_BALBcJ_G0026809	Pabpc1l	64	34.940	MGP_BALBcJ_G0028426	Elavl2	92	34.940
MGP_BALBcJ_G0026809	Pabpc1l	53	39.759	MGP_BALBcJ_G0017426	Cirbp	91	39.759
MGP_BALBcJ_G0026809	Pabpc1l	63	38.889	MGP_BALBcJ_G0034443	Elavl3	59	30.488
MGP_BALBcJ_G0026809	Pabpc1l	58	34.783	MGP_BALBcJ_G0027577	Sf3b4	61	34.756
MGP_BALBcJ_G0026809	Pabpc1l	53	34.884	MGP_BALBcJ_G0025305	Celf2	57	34.884
MGP_BALBcJ_G0026809	Pabpc1l	59	30.818	MGP_BALBcJ_G0035377	Rbms3	77	30.818