EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0027162 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 6159 bases
Position: chr3:43319140-43325298
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0060659	RRM_5	PF13893.6	1.6e-13	1	3
MGP_BALBcJ_P0060659	RRM_5	PF13893.6	1.6e-13	2	3
MGP_BALBcJ_P0060659	RRM_5	PF13893.6	1.6e-13	3	3
MGP_BALBcJ_P0060660	RRM_5	PF13893.6	1.6e-13	1	3
MGP_BALBcJ_P0060660	RRM_5	PF13893.6	1.6e-13	2	3
MGP_BALBcJ_P0060660	RRM_5	PF13893.6	1.6e-13	3	3
MGP_BALBcJ_P0060659	RRM_1	PF00076.22	4.7e-83	1	4
MGP_BALBcJ_P0060659	RRM_1	PF00076.22	4.7e-83	2	4
MGP_BALBcJ_P0060659	RRM_1	PF00076.22	4.7e-83	3	4
MGP_BALBcJ_P0060659	RRM_1	PF00076.22	4.7e-83	4	4
MGP_BALBcJ_P0060660	RRM_1	PF00076.22	4.7e-83	1	4
MGP_BALBcJ_P0060660	RRM_1	PF00076.22	4.7e-83	2	4
MGP_BALBcJ_P0060660	RRM_1	PF00076.22	4.7e-83	3	4
MGP_BALBcJ_P0060660	RRM_1	PF00076.22	4.7e-83	4	4
MGP_BALBcJ_P0060661	RRM_1	PF00076.22	1.8e-40	1	2
MGP_BALBcJ_P0060661	RRM_1	PF00076.22	1.8e-40	2	2
MGP_BALBcJ_P0060662	RRM_1	PF00076.22	2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0060659	-	5249	XM_006500774	MGP_BALBcJ_P0060659	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_BALBcJ_T0060661	-	724	-	MGP_BALBcJ_P0060661	172 (aa)	-	-
MGP_BALBcJ_T0060660	-	5215	-	MGP_BALBcJ_P0060660	370 (aa)	-	-
MGP_BALBcJ_T0060662	-	468	-	MGP_BALBcJ_P0060662	50 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0027162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0027162's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0027162	Pabpc4l	65	34.211	MGP_BALBcJ_G0026107	Celf1	57	37.879
MGP_BALBcJ_G0027162	Pabpc4l	96	30.065	MGP_BALBcJ_G0028558	Elavl4	70	35.484
MGP_BALBcJ_G0027162	Pabpc4l	52	31.461	MGP_BALBcJ_G0028933	-	79	31.461
MGP_BALBcJ_G0027162	Pabpc4l	94	33.333	MGP_BALBcJ_G0033066	Tial1	99	31.618
MGP_BALBcJ_G0027162	Pabpc4l	96	34.940	MGP_BALBcJ_G0028426	Elavl2	89	34.940
MGP_BALBcJ_G0027162	Pabpc4l	96	36.145	MGP_BALBcJ_G0034443	Elavl3	90	36.145
MGP_BALBcJ_G0027162	Pabpc4l	89	31.875	MGP_BALBcJ_G0028850	Trnau1ap	88	34.211
MGP_BALBcJ_G0027162	Pabpc4l	97	57.865	MGP_BALBcJ_G0036017	Pabpc5	96	57.967
MGP_BALBcJ_G0027162	Pabpc4l	95	68.098	MGP_BALBcJ_G0024336	Pabpc2	61	64.167
MGP_BALBcJ_G0027162	Pabpc4l	95	60.736	MGP_BALBcJ_G0026809	Pabpc1l	59	60.736
MGP_BALBcJ_G0027162	Pabpc4l	97	69.277	MGP_BALBcJ_G0021764	Pabpc1	59	67.493
MGP_BALBcJ_G0027162	Pabpc4l	95	30.539	MGP_BALBcJ_G0030954	Tia1	95	30.000
MGP_BALBcJ_G0027162	Pabpc4l	94	30.464	MGP_BALBcJ_G0033314	Elavl1	91	30.464
MGP_BALBcJ_G0027162	Pabpc4l	83	34.286	MGP_BALBcJ_G0035515	Rbm3	90	35.385
MGP_BALBcJ_G0027162	Pabpc4l	99	69.041	MGP_BALBcJ_G0028720	Pabpc4	57	69.048
MGP_BALBcJ_G0027162	Pabpc4l	98	64.497	MGP_BALBcJ_G0023107	Pabpc6	58	64.497