EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0027577 (Gene tree)
Gene ID: -
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|SF3b50|Sap49
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 7905 bases
Position: chr3:93716828-93724732
Accession: 109580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0062499	RRM_1	PF00076.22	4.3e-39	1	2
MGP_BALBcJ_P0062499	RRM_1	PF00076.22	4.3e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0062499	-	1808	-	MGP_BALBcJ_P0062499	388 (aa)	-	Q8QZY9
MGP_BALBcJ_T0062500	-	437	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0027577's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0027577's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0027577	Sf3b4	67	41.358	MGP_BALBcJ_G0021764	Pabpc1	56	41.358
MGP_BALBcJ_G0027577	Sf3b4	61	34.756	MGP_BALBcJ_G0026809	Pabpc1l	58	34.783
MGP_BALBcJ_G0027577	Sf3b4	64	39.506	MGP_BALBcJ_G0024336	Pabpc2	56	39.506
MGP_BALBcJ_G0027577	Sf3b4	56	43.210	MGP_BALBcJ_G0028720	Pabpc4	50	43.210
MGP_BALBcJ_G0027577	Sf3b4	64	40.741	MGP_BALBcJ_G0023107	Pabpc6	56	40.741
MGP_BALBcJ_G0027577	Sf3b4	56	31.390	MGP_BALBcJ_G0033066	Tial1	91	33.594
MGP_BALBcJ_G0027577	Sf3b4	58	31.197	MGP_BALBcJ_G0030954	Tia1	87	39.759