EuRBPDB

Description

Ensembl ID: MGP_BALBcJ_G0028010 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 177867 bases
Position: chr4:5150351-5328217
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0064582	ResIII	PF04851.15	4.5e-06	1	1
MGP_BALBcJ_P0064583	ResIII	PF04851.15	4.5e-06	1	1
MGP_BALBcJ_P0064582	BRK	PF07533.16	4.7e-37	1	2
MGP_BALBcJ_P0064582	BRK	PF07533.16	4.7e-37	2	2
MGP_BALBcJ_P0064583	BRK	PF07533.16	4.7e-37	1	2
MGP_BALBcJ_P0064583	BRK	PF07533.16	4.7e-37	2	2
MGP_BALBcJ_P0064585	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0064580	-	4977	-	-	- (aa)	-	-
MGP_BALBcJ_T0064581	-	2381	-	MGP_BALBcJ_P0064581	631 (aa)	-	-
MGP_BALBcJ_T0064582	-	9445	-	MGP_BALBcJ_P0064582	2986 (aa)	-	-
MGP_BALBcJ_T0064583	-	10216	-	MGP_BALBcJ_P0064583	2986 (aa)	-	-
MGP_BALBcJ_T0064584	-	458	-	MGP_BALBcJ_P0064584	19 (aa)	-	-
MGP_BALBcJ_T0064585	-	3463	-	MGP_BALBcJ_P0064585	941 (aa)	-	-
MGP_BALBcJ_T0064586	-	8958	-	MGP_BALBcJ_P0064586	2985 (aa)	-	-
MGP_BALBcJ_T0064587	-	741	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0028010	Chd7	94	54.334	MGP_BALBcJ_G0033902	Chd9	83	69.649
MGP_BALBcJ_G0028010	Chd7	72	64.905	MGP_BALBcJ_G0026785	Chd6	84	72.837