EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0028558 (Gene tree)
Gene ID: -
Gene Symbol: Elavl4
Alias: Elav|Hud|PNEM
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 4 (Hu antigen D)
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 142283 bases
Position: chr4:107214829-107357111
Accession: 107427
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0066929	RRM_5	PF13893.6	2.8e-13	1	2
MGP_BALBcJ_P0066929	RRM_5	PF13893.6	2.8e-13	2	2
MGP_BALBcJ_P0066924	RRM_5	PF13893.6	3.1e-13	1	2
MGP_BALBcJ_P0066924	RRM_5	PF13893.6	3.1e-13	2	2
MGP_BALBcJ_P0066926	RRM_5	PF13893.6	3.2e-13	1	2
MGP_BALBcJ_P0066926	RRM_5	PF13893.6	3.2e-13	2	2
MGP_BALBcJ_P0066930	RRM_5	PF13893.6	3.4e-13	1	2
MGP_BALBcJ_P0066930	RRM_5	PF13893.6	3.4e-13	2	2
MGP_BALBcJ_P0066928	RRM_5	PF13893.6	3.6e-13	1	2
MGP_BALBcJ_P0066928	RRM_5	PF13893.6	3.6e-13	2	2
MGP_BALBcJ_P0066927	RRM_5	PF13893.6	3.9e-13	1	2
MGP_BALBcJ_P0066927	RRM_5	PF13893.6	3.9e-13	2	2
MGP_BALBcJ_P0066925	RRM_5	PF13893.6	3.9e-13	1	2
MGP_BALBcJ_P0066925	RRM_5	PF13893.6	3.9e-13	2	2
MGP_BALBcJ_P0066929	RRM_1	PF00076.22	2.1e-65	1	3
MGP_BALBcJ_P0066929	RRM_1	PF00076.22	2.1e-65	2	3
MGP_BALBcJ_P0066929	RRM_1	PF00076.22	2.1e-65	3	3
MGP_BALBcJ_P0066926	RRM_1	PF00076.22	2.4e-65	1	3
MGP_BALBcJ_P0066926	RRM_1	PF00076.22	2.4e-65	2	3
MGP_BALBcJ_P0066926	RRM_1	PF00076.22	2.4e-65	3	3
MGP_BALBcJ_P0066924	RRM_1	PF00076.22	2.4e-65	1	3
MGP_BALBcJ_P0066924	RRM_1	PF00076.22	2.4e-65	2	3
MGP_BALBcJ_P0066924	RRM_1	PF00076.22	2.4e-65	3	3
MGP_BALBcJ_P0066930	RRM_1	PF00076.22	2.5e-65	1	3
MGP_BALBcJ_P0066930	RRM_1	PF00076.22	2.5e-65	2	3
MGP_BALBcJ_P0066930	RRM_1	PF00076.22	2.5e-65	3	3
MGP_BALBcJ_P0066928	RRM_1	PF00076.22	2.9e-65	1	3
MGP_BALBcJ_P0066928	RRM_1	PF00076.22	2.9e-65	2	3
MGP_BALBcJ_P0066928	RRM_1	PF00076.22	2.9e-65	3	3
MGP_BALBcJ_P0066927	RRM_1	PF00076.22	2.9e-65	1	3
MGP_BALBcJ_P0066927	RRM_1	PF00076.22	2.9e-65	2	3
MGP_BALBcJ_P0066927	RRM_1	PF00076.22	2.9e-65	3	3
MGP_BALBcJ_P0066925	RRM_1	PF00076.22	3e-65	1	3
MGP_BALBcJ_P0066925	RRM_1	PF00076.22	3e-65	2	3
MGP_BALBcJ_P0066925	RRM_1	PF00076.22	3e-65	3	3
MGP_BALBcJ_P0066932	RRM_1	PF00076.22	1.2e-20	1	1
MGP_BALBcJ_P0066934	RRM_1	PF00076.22	6.8e-13	1	1
MGP_BALBcJ_P0066935	RRM_1	PF00076.22	9.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0066934	-	663	-	MGP_BALBcJ_P0066934	94 (aa)	-	-
MGP_BALBcJ_T0066928	-	4023	-	MGP_BALBcJ_P0066928	380 (aa)	-	-
MGP_BALBcJ_T0066929	-	3760	-	MGP_BALBcJ_P0066929	356 (aa)	-	-
MGP_BALBcJ_T0066935	-	488	-	MGP_BALBcJ_P0066935	92 (aa)	-	-
MGP_BALBcJ_T0066933	-	464	-	-	- (aa)	-	-
MGP_BALBcJ_T0066932	-	644	-	MGP_BALBcJ_P0066932	137 (aa)	-	-
MGP_BALBcJ_T0066931	-	869	-	-	- (aa)	-	-
MGP_BALBcJ_T0066930	-	4106	-	MGP_BALBcJ_P0066930	371 (aa)	-	-
MGP_BALBcJ_T0066924	-	3996	XM_006502793	MGP_BALBcJ_P0066924	366 (aa)	XP_006502856	Q61701
MGP_BALBcJ_T0066925	-	4148	-	MGP_BALBcJ_P0066925	385 (aa)	-	-
MGP_BALBcJ_T0066926	-	3774	-	MGP_BALBcJ_P0066926	366 (aa)	-	-
MGP_BALBcJ_T0066927	-	3798	-	MGP_BALBcJ_P0066927	383 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0028558's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0028558's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0028558	Elavl4	94	35.897	MGP_BALBcJ_G0030954	Tia1	98	32.895
MGP_BALBcJ_G0028558	Elavl4	88	34.940	MGP_BALBcJ_G0024336	Pabpc2	59	34.940
MGP_BALBcJ_G0028558	Elavl4	89	33.735	MGP_BALBcJ_G0026809	Pabpc1l	62	33.735
MGP_BALBcJ_G0028558	Elavl4	81	38.272	MGP_BALBcJ_G0025305	Celf2	61	38.272
MGP_BALBcJ_G0028558	Elavl4	57	37.037	MGP_BALBcJ_G0030073	Snrnp35	59	33.803
MGP_BALBcJ_G0028558	Elavl4	85	40.741	MGP_BALBcJ_G0027523	Celf3	61	40.741
MGP_BALBcJ_G0028558	Elavl4	99	79.893	MGP_BALBcJ_G0034443	Elavl3	99	80.323
MGP_BALBcJ_G0028558	Elavl4	90	30.625	MGP_BALBcJ_G0028720	Pabpc4	54	30.952
MGP_BALBcJ_G0028558	Elavl4	70	36.458	MGP_BALBcJ_G0025735	Rbms1	53	32.773
MGP_BALBcJ_G0028558	Elavl4	70	36.458	MGP_BALBcJ_G0035377	Rbms3	83	37.097
MGP_BALBcJ_G0028558	Elavl4	74	33.708	MGP_BALBcJ_G0035718	Rbmx	86	33.708
MGP_BALBcJ_G0028558	Elavl4	88	36.145	MGP_BALBcJ_G0021764	Pabpc1	58	36.145
MGP_BALBcJ_G0028558	Elavl4	88	35.897	MGP_BALBcJ_G0033066	Tial1	73	35.897
MGP_BALBcJ_G0028558	Elavl4	78	30.088	MGP_BALBcJ_G0018865	Msi2	84	30.208
MGP_BALBcJ_G0028558	Elavl4	70	38.889	MGP_BALBcJ_G0017426	Cirbp	84	38.889
MGP_BALBcJ_G0028558	Elavl4	58	31.646	MGP_BALBcJ_G0035515	Rbm3	82	38.710
MGP_BALBcJ_G0028558	Elavl4	88	38.272	MGP_BALBcJ_G0024174	Celf4	91	35.802
MGP_BALBcJ_G0028558	Elavl4	99	89.315	MGP_BALBcJ_G0028426	Elavl2	100	89.751
MGP_BALBcJ_G0028558	Elavl4	54	33.784	MGP_BALBcJ_G0027596	Rbm8a	62	30.693
MGP_BALBcJ_G0028558	Elavl4	85	40.741	MGP_BALBcJ_G0034875	Celf6	95	35.802
MGP_BALBcJ_G0028558	Elavl4	89	73.585	MGP_BALBcJ_G0033314	Elavl1	98	73.585
MGP_BALBcJ_G0028558	Elavl4	78	40.741	MGP_BALBcJ_G0026107	Celf1	62	40.741
MGP_BALBcJ_G0028558	Elavl4	72	35.821	MGP_BALBcJ_G0030703	Tra2a	59	37.097
MGP_BALBcJ_G0028558	Elavl4	88	32.468	MGP_BALBcJ_G0023107	Pabpc6	60	32.468
MGP_BALBcJ_G0028558	Elavl4	70	35.484	MGP_BALBcJ_G0027162	Pabpc4l	96	30.065
MGP_BALBcJ_G0028558	Elavl4	66	42.373	MGP_BALBcJ_G0017432	Dazap1	64	30.275