EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0028720 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 36293 bases
Position: chr4:120407757-120444049
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0067614	PABP	PF00658.18	3.7e-31	1	1
MGP_BALBcJ_P0067614	RRM_5	PF13893.6	1.1e-08	1	1
MGP_BALBcJ_P0067614	RRM_1	PF00076.22	8.7e-90	1	4
MGP_BALBcJ_P0067614	RRM_1	PF00076.22	8.7e-90	2	4
MGP_BALBcJ_P0067614	RRM_1	PF00076.22	8.7e-90	3	4
MGP_BALBcJ_P0067614	RRM_1	PF00076.22	8.7e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0067613	-	245	-	-	- (aa)	-	-
MGP_BALBcJ_T0067615	-	692	-	-	- (aa)	-	-
MGP_BALBcJ_T0067614	-	2103	-	MGP_BALBcJ_P0067614	700 (aa)	-	-
MGP_BALBcJ_T0067616	-	1146	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0028720's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0028720's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0028720	Pabpc4	99	61.603	MGP_BALBcJ_G0023107	Pabpc6	99	61.798
MGP_BALBcJ_G0028720	Pabpc4	99	73.367	MGP_BALBcJ_G0027014	-	100	73.367
MGP_BALBcJ_G0028720	Pabpc4	53	65.449	MGP_BALBcJ_G0036017	Pabpc5	95	65.289
MGP_BALBcJ_G0028720	Pabpc4	52	33.553	MGP_BALBcJ_G0033314	Elavl1	95	33.553
MGP_BALBcJ_G0028720	Pabpc4	78	69.108	MGP_BALBcJ_G0026809	Pabpc1l	88	68.315
MGP_BALBcJ_G0028720	Pabpc4	51	36.905	MGP_BALBcJ_G0030954	Tia1	95	33.333
MGP_BALBcJ_G0028720	Pabpc4	54	30.952	MGP_BALBcJ_G0028558	Elavl4	90	30.625
MGP_BALBcJ_G0028720	Pabpc4	99	70.935	MGP_BALBcJ_G0021764	Pabpc1	79	93.548
MGP_BALBcJ_G0028720	Pabpc4	52	37.500	MGP_BALBcJ_G0025305	Celf2	57	37.500
MGP_BALBcJ_G0028720	Pabpc4	99	61.406	MGP_BALBcJ_G0024336	Pabpc2	99	61.263
MGP_BALBcJ_G0028720	Pabpc4	52	31.579	MGP_BALBcJ_G0028426	Elavl2	89	34.940
MGP_BALBcJ_G0028720	Pabpc4	50	43.210	MGP_BALBcJ_G0027577	Sf3b4	56	43.210
MGP_BALBcJ_G0028720	Pabpc4	51	31.250	MGP_BALBcJ_G0033066	Tial1	94	30.233
MGP_BALBcJ_G0028720	Pabpc4	57	69.048	MGP_BALBcJ_G0027162	Pabpc4l	99	69.041