EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0029110 (Gene tree)
Gene ID: -
Gene Symbol: Tardbp
Alias: 1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name: TAR DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 14518 bases
Position: chr4:146549432-146563949
Accession: 2387629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0069269	RRM_1	PF00076.22	1.2e-26	1	2
MGP_BALBcJ_P0069269	RRM_1	PF00076.22	1.2e-26	2	2
MGP_BALBcJ_P0069262	RRM_1	PF00076.22	4.4e-26	1	2
MGP_BALBcJ_P0069262	RRM_1	PF00076.22	4.4e-26	2	2
MGP_BALBcJ_P0069247	RRM_1	PF00076.22	4.5e-26	1	2
MGP_BALBcJ_P0069247	RRM_1	PF00076.22	4.5e-26	2	2
MGP_BALBcJ_P0069266	RRM_1	PF00076.22	4.5e-26	1	2
MGP_BALBcJ_P0069266	RRM_1	PF00076.22	4.5e-26	2	2
MGP_BALBcJ_P0069244	RRM_1	PF00076.22	4.8e-26	1	2
MGP_BALBcJ_P0069244	RRM_1	PF00076.22	4.8e-26	2	2
MGP_BALBcJ_P0069267	RRM_1	PF00076.22	4.8e-26	1	2
MGP_BALBcJ_P0069267	RRM_1	PF00076.22	4.8e-26	2	2
MGP_BALBcJ_P0069246	RRM_1	PF00076.22	4.9e-26	1	2
MGP_BALBcJ_P0069246	RRM_1	PF00076.22	4.9e-26	2	2
MGP_BALBcJ_P0069268	RRM_1	PF00076.22	4.9e-26	1	2
MGP_BALBcJ_P0069268	RRM_1	PF00076.22	4.9e-26	2	2
MGP_BALBcJ_P0069245	RRM_1	PF00076.22	1.2e-25	1	2
MGP_BALBcJ_P0069245	RRM_1	PF00076.22	1.2e-25	2	2
MGP_BALBcJ_P0069271	RRM_1	PF00076.22	4e-15	1	1
MGP_BALBcJ_P0069272	RRM_1	PF00076.22	4.9e-11	1	1
MGP_BALBcJ_P0069263	RRM_1	PF00076.22	6.6e-09	1	1
MGP_BALBcJ_P0069265	RRM_1	PF00076.22	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0069248	-	1773	-	MGP_BALBcJ_P0069248	298 (aa)	-	-
MGP_BALBcJ_T0069249	-	731	-	-	- (aa)	-	-
MGP_BALBcJ_T0069244	-	6285	XM_011250237	MGP_BALBcJ_P0069244	304 (aa)	XP_011248539	Q921F2
MGP_BALBcJ_T0069245	-	7249	-	MGP_BALBcJ_P0069245	414 (aa)	-	-
MGP_BALBcJ_T0069246	-	6197	-	MGP_BALBcJ_P0069246	302 (aa)	-	-
MGP_BALBcJ_T0069247	-	6267	-	MGP_BALBcJ_P0069247	298 (aa)	-	-
MGP_BALBcJ_T0069262	-	1674	-	MGP_BALBcJ_P0069262	295 (aa)	-	-
MGP_BALBcJ_T0069263	-	495	-	MGP_BALBcJ_P0069263	128 (aa)	-	-
MGP_BALBcJ_T0069260	-	684	-	MGP_BALBcJ_P0069260	137 (aa)	-	-
MGP_BALBcJ_T0069261	-	517	-	MGP_BALBcJ_P0069261	77 (aa)	-	-
MGP_BALBcJ_T0069266	-	1096	-	MGP_BALBcJ_P0069266	298 (aa)	-	-
MGP_BALBcJ_T0069267	-	1011	-	MGP_BALBcJ_P0069267	304 (aa)	-	-
MGP_BALBcJ_T0069264	-	661	-	MGP_BALBcJ_P0069264	19 (aa)	-	-
MGP_BALBcJ_T0069265	-	748	-	MGP_BALBcJ_P0069265	84 (aa)	-	-
MGP_BALBcJ_T0069268	-	923	-	MGP_BALBcJ_P0069268	302 (aa)	-	-
MGP_BALBcJ_T0069269	-	709	-	MGP_BALBcJ_P0069269	199 (aa)	-	-
MGP_BALBcJ_T0069271	-	818	-	MGP_BALBcJ_P0069271	243 (aa)	-	-
MGP_BALBcJ_T0069259	-	1304	-	MGP_BALBcJ_P0069259	285 (aa)	-	-
MGP_BALBcJ_T0069258	-	781	-	MGP_BALBcJ_P0069258	140 (aa)	-	-
MGP_BALBcJ_T0069270	-	1411	-	MGP_BALBcJ_P0069270	84 (aa)	-	-
MGP_BALBcJ_T0069253	-	617	-	-	- (aa)	-	-
MGP_BALBcJ_T0069252	-	908	-	-	- (aa)	-	-
MGP_BALBcJ_T0069251	-	676	-	MGP_BALBcJ_P0069251	88 (aa)	-	-
MGP_BALBcJ_T0069250	-	529	-	MGP_BALBcJ_P0069250	98 (aa)	-	-
MGP_BALBcJ_T0069257	-	741	-	MGP_BALBcJ_P0069257	175 (aa)	-	-
MGP_BALBcJ_T0069256	-	1011	-	MGP_BALBcJ_P0069256	34 (aa)	-	-
MGP_BALBcJ_T0069255	-	2006	-	MGP_BALBcJ_P0069255	298 (aa)	-	-
MGP_BALBcJ_T0069254	-	358	-	-	- (aa)	-	-
MGP_BALBcJ_T0069273	-	370	-	-	- (aa)	-	-
MGP_BALBcJ_T0069272	-	740	-	MGP_BALBcJ_P0069272	149 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0029110's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0029110's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0029110	Tardbp	92	35.000	MGP_BALBcJ_G0035718	Rbmx	78	35.000
MGP_BALBcJ_G0029110	Tardbp	72	38.806	MGP_BALBcJ_G0033314	Elavl1	59	31.481
MGP_BALBcJ_G0029110	Tardbp	77	31.447	MGP_BALBcJ_G0029758	Hnrnpdl	64	30.000
MGP_BALBcJ_G0029110	Tardbp	77	38.194	MGP_BALBcJ_G0029756	Hnrnpd	75	51.389
MGP_BALBcJ_G0029110	Tardbp	94	30.282	MGP_BALBcJ_G0030715	Hnrnpa2b1	66	30.348
MGP_BALBcJ_G0029110	Tardbp	88	31.818	MGP_BALBcJ_G0017432	Dazap1	89	35.065
MGP_BALBcJ_G0029110	Tardbp	86	33.146	MGP_BALBcJ_G0018209	Hnrnpab	82	32.099
MGP_BALBcJ_G0029110	Tardbp	79	34.021	MGP_BALBcJ_G0029944	Msi1	62	34.021
MGP_BALBcJ_G0029110	Tardbp	79	31.818	MGP_BALBcJ_G0018865	Msi2	100	35.398