EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0029944 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 27122 bases
Position: chr5:114993239-115020360
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0073689	RRM_1	PF00076.22	6.9e-33	1	2
MGP_BALBcJ_P0073689	RRM_1	PF00076.22	6.9e-33	2	2
MGP_BALBcJ_P0073690	RRM_1	PF00076.22	1.6e-28	1	2
MGP_BALBcJ_P0073690	RRM_1	PF00076.22	1.6e-28	2	2
MGP_BALBcJ_P0073694	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0073690	-	807	-	MGP_BALBcJ_P0073690	268 (aa)	-	-
MGP_BALBcJ_T0073691	-	367	-	-	- (aa)	-	-
MGP_BALBcJ_T0073692	-	806	-	-	- (aa)	-	-
MGP_BALBcJ_T0073693	-	581	-	-	- (aa)	-	-
MGP_BALBcJ_T0073694	-	726	-	MGP_BALBcJ_P0073694	196 (aa)	-	-
MGP_BALBcJ_T0073695	-	596	-	-	- (aa)	-	-
MGP_BALBcJ_T0073689	-	3303	-	MGP_BALBcJ_P0073689	362 (aa)	-	-
MGP_BALBcJ_T0073688	-	2626	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0029944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0029944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0029944	Msi1	57	42.949	MGP_BALBcJ_G0020577	Hnrnpa0	60	43.646
MGP_BALBcJ_G0029944	Msi1	61	51.064	MGP_BALBcJ_G0026928	Rbm38	66	46.809
MGP_BALBcJ_G0029944	Msi1	59	36.782	MGP_BALBcJ_G0025828	Hnrnpa3	65	36.782
MGP_BALBcJ_G0029944	Msi1	62	34.021	MGP_BALBcJ_G0029110	Tardbp	79	34.021
MGP_BALBcJ_G0029944	Msi1	58	48.052	MGP_BALBcJ_G0029758	Hnrnpdl	75	39.676
MGP_BALBcJ_G0029944	Msi1	56	41.379	MGP_BALBcJ_G0033066	Tial1	69	31.469
MGP_BALBcJ_G0029944	Msi1	51	38.983	MGP_BALBcJ_G0017426	Cirbp	87	40.351
MGP_BALBcJ_G0029944	Msi1	99	75.665	MGP_BALBcJ_G0018865	Msi2	100	90.323
MGP_BALBcJ_G0029944	Msi1	88	42.308	MGP_BALBcJ_G0017432	Dazap1	98	44.311
MGP_BALBcJ_G0029944	Msi1	58	48.052	MGP_BALBcJ_G0018209	Hnrnpab	79	40.800
MGP_BALBcJ_G0029944	Msi1	62	42.857	MGP_BALBcJ_G0029756	Hnrnpd	89	44.162
MGP_BALBcJ_G0029944	Msi1	61	43.750	MGP_BALBcJ_G0030715	Hnrnpa2b1	91	41.379