EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0030812 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 160890 bases
Position: chr6:63245889-63406778
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	1	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	2	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	3	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	4	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	5	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	6	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	7	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	8	9
MGP_BALBcJ_P0077907	zf-C2H2	PF00096.26	5.7e-59	9	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	1	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	2	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	3	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	4	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	5	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	6	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	7	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	8	9
MGP_BALBcJ_P0077902	zf-C2H2	PF00096.26	1e-58	9	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	1	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	2	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	3	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	4	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	5	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	6	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	7	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	8	9
MGP_BALBcJ_P0077905	zf-C2H2	PF00096.26	1e-48	9	9
MGP_BALBcJ_P0077904	zf-C2H2	PF00096.26	8.2e-27	1	5
MGP_BALBcJ_P0077904	zf-C2H2	PF00096.26	8.2e-27	2	5
MGP_BALBcJ_P0077904	zf-C2H2	PF00096.26	8.2e-27	3	5
MGP_BALBcJ_P0077904	zf-C2H2	PF00096.26	8.2e-27	4	5
MGP_BALBcJ_P0077904	zf-C2H2	PF00096.26	8.2e-27	5	5
MGP_BALBcJ_P0077907	zf-met	PF12874.7	1.5e-20	1	3
MGP_BALBcJ_P0077907	zf-met	PF12874.7	1.5e-20	2	3
MGP_BALBcJ_P0077907	zf-met	PF12874.7	1.5e-20	3	3
MGP_BALBcJ_P0077902	zf-met	PF12874.7	2.7e-20	1	3
MGP_BALBcJ_P0077902	zf-met	PF12874.7	2.7e-20	2	3
MGP_BALBcJ_P0077902	zf-met	PF12874.7	2.7e-20	3	3
MGP_BALBcJ_P0077905	zf-met	PF12874.7	8.9e-17	1	3
MGP_BALBcJ_P0077905	zf-met	PF12874.7	8.9e-17	2	3
MGP_BALBcJ_P0077905	zf-met	PF12874.7	8.9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0077908	-	1920	-	-	- (aa)	-	-
MGP_BALBcJ_T0077902	-	2155	XM_006506600	MGP_BALBcJ_P0077902	599 (aa)	XP_006506663	Q9CXE0
MGP_BALBcJ_T0077903	-	1886	-	-	- (aa)	-	-
MGP_BALBcJ_T0077904	-	984	-	MGP_BALBcJ_P0077904	221 (aa)	-	-
MGP_BALBcJ_T0077905	-	1488	-	MGP_BALBcJ_P0077905	415 (aa)	-	-
MGP_BALBcJ_T0077906	-	4168	-	-	- (aa)	-	-
MGP_BALBcJ_T0077907	-	1935	-	MGP_BALBcJ_P0077907	579 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0030812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0030812's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0030812	Prdm5	78	44.444	MGP_BALBcJ_G0031158	Zfp637	83	46.479
MGP_BALBcJ_G0030812	Prdm5	95	43.220	MGP_BALBcJ_G0023192	Zfp677	79	36.027
MGP_BALBcJ_G0030812	Prdm5	78	47.826	MGP_BALBcJ_G0020223	Zkscan4	53	47.826
MGP_BALBcJ_G0030812	Prdm5	74	40.104	MGP_BALBcJ_G0031550	Zfp628	60	38.208
MGP_BALBcJ_G0030812	Prdm5	84	32.735	MGP_BALBcJ_G0031558	Zfp865	78	32.895
MGP_BALBcJ_G0030812	Prdm5	78	38.571	MGP_BALBcJ_G0018193	Zfp454	68	38.571
MGP_BALBcJ_G0030812	Prdm5	91	39.062	MGP_BALBcJ_G0021980	Zfp251	68	51.020
MGP_BALBcJ_G0030812	Prdm5	72	48.760	MGP_BALBcJ_G0032107	Zfp715	66	39.333
MGP_BALBcJ_G0030812	Prdm5	73	40.562	MGP_BALBcJ_G0033020	Zfp768	53	43.571
MGP_BALBcJ_G0030812	Prdm5	97	39.145	MGP_BALBcJ_G0023194	Zfp51	99	39.145
MGP_BALBcJ_G0030812	Prdm5	90	42.609	MGP_BALBcJ_G0033744	Zfp882	94	35.714
MGP_BALBcJ_G0030812	Prdm5	76	39.796	MGP_BALBcJ_G0033743	Zfp709	87	39.796
MGP_BALBcJ_G0030812	Prdm5	81	42.941	MGP_BALBcJ_G0026439	Zfp661	65	42.941
MGP_BALBcJ_G0030812	Prdm5	67	50.847	MGP_BALBcJ_G0034117	Zfp1	67	40.167
MGP_BALBcJ_G0030812	Prdm5	68	42.361	MGP_BALBcJ_G0030681	Repin1	92	42.069
MGP_BALBcJ_G0030812	Prdm5	61	45.045	MGP_BALBcJ_G0026197	Wt1	55	40.876
MGP_BALBcJ_G0030812	Prdm5	76	40.000	MGP_BALBcJ_G0018928	Zfp652	50	36.242
MGP_BALBcJ_G0030812	Prdm5	68	48.544	MGP_BALBcJ_G0034200	Snai3	55	42.336
MGP_BALBcJ_G0030812	Prdm5	79	40.244	MGP_BALBcJ_G0029484	Zbtb49	96	45.070
MGP_BALBcJ_G0030812	Prdm5	67	46.667	MGP_BALBcJ_G0031839	Zfp574	85	30.051
MGP_BALBcJ_G0030812	Prdm5	90	35.235	MGP_BALBcJ_G0023223	Zscan10	88	44.915
MGP_BALBcJ_G0030812	Prdm5	74	43.846	MGP_BALBcJ_G0029820	Gfi1	99	45.133
MGP_BALBcJ_G0030812	Prdm5	84	36.545	MGP_BALBcJ_G0018339	Zfp867	95	36.545
MGP_BALBcJ_G0030812	Prdm5	84	43.277	MGP_BALBcJ_G0020651	Rslcan18	71	39.200
MGP_BALBcJ_G0030812	Prdm5	83	38.014	MGP_BALBcJ_G0020652	Zfp759	94	38.870
MGP_BALBcJ_G0030812	Prdm5	87	46.739	MGP_BALBcJ_G0024567	Zfp236	77	43.860
MGP_BALBcJ_G0030812	Prdm5	78	39.009	MGP_BALBcJ_G0031910	Zfp974	90	39.009
MGP_BALBcJ_G0030812	Prdm5	82	40.076	MGP_BALBcJ_G0034450	Zfp872	99	40.530
MGP_BALBcJ_G0030812	Prdm5	70	48.315	MGP_BALBcJ_G0023214	Zfp945	82	35.252
MGP_BALBcJ_G0030812	Prdm5	90	46.067	MGP_BALBcJ_G0026868	Zfp334	67	40.000
MGP_BALBcJ_G0030812	Prdm5	73	44.286	MGP_BALBcJ_G0031801	Zfp235	68	39.608
MGP_BALBcJ_G0030812	Prdm5	88	42.857	MGP_BALBcJ_G0018290	Zfp672	86	44.286
MGP_BALBcJ_G0030812	Prdm5	91	48.387	MGP_BALBcJ_G0031974	Zfp420	95	41.722
MGP_BALBcJ_G0030812	Prdm5	74	48.913	MGP_BALBcJ_G0031808	Zfp94	73	48.913
MGP_BALBcJ_G0030812	Prdm5	75	43.787	MGP_BALBcJ_G0031806	-	99	48.936
MGP_BALBcJ_G0030812	Prdm5	68	47.826	MGP_BALBcJ_G0031807	Zfp61	53	41.525
MGP_BALBcJ_G0030812	Prdm5	93	38.115	MGP_BALBcJ_G0031805	Zfp108	66	38.115
MGP_BALBcJ_G0030812	Prdm5	69	47.857	MGP_BALBcJ_G0031800	Zfp112	68	39.711
MGP_BALBcJ_G0030812	Prdm5	75	34.545	MGP_BALBcJ_G0026906	Zfp64	69	31.561
MGP_BALBcJ_G0030812	Prdm5	78	34.752	MGP_BALBcJ_G0033958	Zfp319	86	39.041