EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0031394 (Gene tree)
Gene ID: -
Gene Symbol: Ddx47
Alias: 4930588A18Rik|C77285
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 12541 bases
Position: chr6:133660482-133673022
Accession: 1915005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0080628	ResIII	PF04851.15	1.1e-05	1	1
MGP_BALBcJ_P0080620	ResIII	PF04851.15	1.5e-05	1	1
MGP_BALBcJ_P0080628	DEAD	PF00270.29	1.8e-48	1	1
MGP_BALBcJ_P0080620	DEAD	PF00270.29	2.8e-48	1	1
MGP_BALBcJ_P0080627	DEAD	PF00270.29	4.3e-38	1	2
MGP_BALBcJ_P0080627	DEAD	PF00270.29	4.3e-38	2	2
MGP_BALBcJ_P0080622	DEAD	PF00270.29	1.1e-21	1	1
MGP_BALBcJ_P0080625	DEAD	PF00270.29	3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0080627	-	1139	-	MGP_BALBcJ_P0080627	379 (aa)	-	-
MGP_BALBcJ_T0080626	-	620	-	-	- (aa)	-	-
MGP_BALBcJ_T0080625	-	551	-	MGP_BALBcJ_P0080625	180 (aa)	-	-
MGP_BALBcJ_T0080624	-	4017	-	-	- (aa)	-	-
MGP_BALBcJ_T0080623	-	978	-	-	- (aa)	-	-
MGP_BALBcJ_T0080622	-	607	-	MGP_BALBcJ_P0080622	196 (aa)	-	-
MGP_BALBcJ_T0080621	-	435	-	MGP_BALBcJ_P0080621	138 (aa)	-	-
MGP_BALBcJ_T0080620	-	1764	-	MGP_BALBcJ_P0080620	455 (aa)	-	Q9CWX9
MGP_BALBcJ_T0080629	-	693	-	-	- (aa)	-	-
MGP_BALBcJ_T0080628	-	1078	-	MGP_BALBcJ_P0080628	359 (aa)	-	-
MGP_BALBcJ_T0080630	-	791	-	-	- (aa)	-	-
MGP_BALBcJ_T0080631	-	3272	-	MGP_BALBcJ_P0080631	61 (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0031394's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0031394's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0031394	Ddx47	85	33.333	MGP_BALBcJ_G0020552	Ddx41	58	35.556
MGP_BALBcJ_G0031394	Ddx47	88	37.705	MGP_BALBcJ_G0016355	Ddx18	55	37.705
MGP_BALBcJ_G0031394	Ddx47	84	35.652	MGP_BALBcJ_G0025506	Ddx31	61	31.765
MGP_BALBcJ_G0031394	Ddx47	86	46.875	MGP_BALBcJ_G0019548	Ddx1	60	46.875
MGP_BALBcJ_G0031394	Ddx47	94	30.175	MGP_BALBcJ_G0017241	Ddx50	61	30.676
MGP_BALBcJ_G0031394	Ddx47	85	31.458	MGP_BALBcJ_G0018486	Eif4a1	96	31.458
MGP_BALBcJ_G0031394	Ddx47	81	35.977	MGP_BALBcJ_G0030076	Ddx55	57	35.977
MGP_BALBcJ_G0031394	Ddx47	96	30.749	MGP_BALBcJ_G0019421	Eif4a3	94	32.041
MGP_BALBcJ_G0031394	Ddx47	63	31.579	MGP_BALBcJ_G0034106	Ddx19b	73	31.579
MGP_BALBcJ_G0031394	Ddx47	83	32.011	MGP_BALBcJ_G0018803	Ddx52	58	33.428
MGP_BALBcJ_G0031394	Ddx47	75	45.714	MGP_BALBcJ_G0022645	Eif4a2	94	31.195
MGP_BALBcJ_G0031394	Ddx47	90	32.095	MGP_BALBcJ_G0033815	Ddx39	89	32.620
MGP_BALBcJ_G0031394	Ddx47	95	45.824	MGP_BALBcJ_G0033678	Ddx49	97	49.271
MGP_BALBcJ_G0031394	Ddx47	86	38.889	MGP_BALBcJ_G0017959	Ddx56	99	35.887
MGP_BALBcJ_G0031394	Ddx47	86	33.690	MGP_BALBcJ_G0035542	Ddx3x	56	34.492
MGP_BALBcJ_G0031394	Ddx47	91	31.806	MGP_BALBcJ_G0016484	Ddx59	60	33.602
MGP_BALBcJ_G0031394	Ddx47	85	36.869	MGP_BALBcJ_G0022044	Ddx17	57	37.374
MGP_BALBcJ_G0031394	Ddx47	91	34.218	MGP_BALBcJ_G0035037	Ddx43	59	35.678
MGP_BALBcJ_G0031394	Ddx47	80	37.389	MGP_BALBcJ_G0019255	Ddx5	71	37.457
MGP_BALBcJ_G0031394	Ddx47	52	37.234	MGP_BALBcJ_G0031403	-	79	32.571
MGP_BALBcJ_G0031394	Ddx47	93	33.760	MGP_BALBcJ_G0020888	Ddx4	56	34.271
MGP_BALBcJ_G0031394	Ddx47	70	49.398	MGP_BALBcJ_G0034048	Ddx28	72	33.079
MGP_BALBcJ_G0031394	Ddx47	86	33.690	MGP_BALBcJ_G0016858	D1Pas1	57	34.759