EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0033815 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 11703 bases
Position: chr8:81354816-81366518
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0089617	ResIII	PF04851.15	3.1e-05	1	1
MGP_BALBcJ_P0089620	ResIII	PF04851.15	3.1e-05	1	1
MGP_BALBcJ_P0089621	ResIII	PF04851.15	3.1e-05	1	1
MGP_BALBcJ_P0089617	DEAD	PF00270.29	4.1e-38	1	1
MGP_BALBcJ_P0089620	DEAD	PF00270.29	4.1e-38	1	1
MGP_BALBcJ_P0089621	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0089622	-	754	-	-	- (aa)	-	-
MGP_BALBcJ_T0089620	-	3858	-	MGP_BALBcJ_P0089620	427 (aa)	-	-
MGP_BALBcJ_T0089621	-	1794	-	MGP_BALBcJ_P0089621	427 (aa)	-	-
MGP_BALBcJ_T0089617	-	1656	XM_006531332	MGP_BALBcJ_P0089617	427 (aa)	XP_006531395	Q8VDW0
MGP_BALBcJ_T0089619	-	1551	-	MGP_BALBcJ_P0089619	208 (aa)	-	-
MGP_BALBcJ_T0089618	-	1927	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0033815's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0033815's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0033815	Ddx39	90	36.010	MGP_BALBcJ_G0018486	Eif4a1	94	36.010
MGP_BALBcJ_G0033815	Ddx39	90	30.392	MGP_BALBcJ_G0035542	Ddx3x	56	31.565
MGP_BALBcJ_G0033815	Ddx39	78	32.121	MGP_BALBcJ_G0034106	Ddx19b	71	39.252
MGP_BALBcJ_G0033815	Ddx39	87	33.156	MGP_BALBcJ_G0033678	Ddx49	97	33.333
MGP_BALBcJ_G0033815	Ddx39	76	32.911	MGP_BALBcJ_G0031403	-	77	32.487
MGP_BALBcJ_G0033815	Ddx39	86	37.197	MGP_BALBcJ_G0019421	Eif4a3	89	37.197
MGP_BALBcJ_G0033815	Ddx39	76	42.405	MGP_BALBcJ_G0022645	Eif4a2	90	35.562
MGP_BALBcJ_G0033815	Ddx39	74	34.969	MGP_BALBcJ_G0017959	Ddx56	61	32.051
MGP_BALBcJ_G0033815	Ddx39	90	30.392	MGP_BALBcJ_G0016858	D1Pas1	57	31.565
MGP_BALBcJ_G0033815	Ddx39	90	34.074	MGP_BALBcJ_G0027690	Ddx20	50	34.140
MGP_BALBcJ_G0033815	Ddx39	89	32.620	MGP_BALBcJ_G0031394	Ddx47	90	32.095
MGP_BALBcJ_G0033815	Ddx39	85	31.183	MGP_BALBcJ_G0034505	Ddx25	81	31.328