EuRBPDB

Description

Ensembl ID: MGP_BALBcJ_G0035078 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Minus strand
Length: 36557 bases
Position: chr9:85820107-85856663
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0093539	RRM_5	PF13893.6	2.5e-06	1	1
MGP_BALBcJ_P0093542	RRM_5	PF13893.6	3.2e-06	1	1
MGP_BALBcJ_P0093540	RRM_5	PF13893.6	4.8e-06	1	1
MGP_BALBcJ_P0093537	RRM_5	PF13893.6	4.8e-06	1	1
MGP_BALBcJ_P0093543	RRM_5	PF13893.6	6.2e-06	1	1
MGP_BALBcJ_P0093540	RRM_1	PF00076.22	3e-44	1	3
MGP_BALBcJ_P0093540	RRM_1	PF00076.22	3e-44	2	3
MGP_BALBcJ_P0093540	RRM_1	PF00076.22	3e-44	3	3
MGP_BALBcJ_P0093537	RRM_1	PF00076.22	3e-44	1	3
MGP_BALBcJ_P0093537	RRM_1	PF00076.22	3e-44	2	3
MGP_BALBcJ_P0093537	RRM_1	PF00076.22	3e-44	3	3
MGP_BALBcJ_P0093543	RRM_1	PF00076.22	4.6e-44	1	3
MGP_BALBcJ_P0093543	RRM_1	PF00076.22	4.6e-44	2	3
MGP_BALBcJ_P0093543	RRM_1	PF00076.22	4.6e-44	3	3
MGP_BALBcJ_P0093539	RRM_1	PF00076.22	8.4e-43	1	3
MGP_BALBcJ_P0093539	RRM_1	PF00076.22	8.4e-43	2	3
MGP_BALBcJ_P0093539	RRM_1	PF00076.22	8.4e-43	3	3
MGP_BALBcJ_P0093542	RRM_1	PF00076.22	1.3e-42	1	3
MGP_BALBcJ_P0093542	RRM_1	PF00076.22	1.3e-42	2	3
MGP_BALBcJ_P0093542	RRM_1	PF00076.22	1.3e-42	3	3
MGP_BALBcJ_P0093538	RRM_1	PF00076.22	1.4e-31	1	2
MGP_BALBcJ_P0093538	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0093546	-	2385	-	-	- (aa)	-	-
MGP_BALBcJ_T0093547	-	484	-	MGP_BALBcJ_P0093547	94 (aa)	-	-
MGP_BALBcJ_T0093544	-	549	-	-	- (aa)	-	-
MGP_BALBcJ_T0093545	-	766	-	MGP_BALBcJ_P0093545	196 (aa)	-	-
MGP_BALBcJ_T0093542	-	1767	-	MGP_BALBcJ_P0093542	588 (aa)	-	-
MGP_BALBcJ_T0093543	-	1872	-	MGP_BALBcJ_P0093543	623 (aa)	-	-
MGP_BALBcJ_T0093540	-	3415	-	MGP_BALBcJ_P0093540	561 (aa)	-	-
MGP_BALBcJ_T0093541	-	1936	-	MGP_BALBcJ_P0093541	67 (aa)	-	-
MGP_BALBcJ_T0093539	-	3297	-	MGP_BALBcJ_P0093539	527 (aa)	-	-
MGP_BALBcJ_T0093538	-	3175	-	MGP_BALBcJ_P0093538	448 (aa)	-	-
MGP_BALBcJ_T0093537	-	9465	XM_006511293	MGP_BALBcJ_P0093537	562 (aa)	XP_006511356	Q7TMK9

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0035078	Syncrip	53	54.333	MGP_BALBcJ_G0027302	Rbm46	63	55.000
MGP_BALBcJ_G0035078	Syncrip	75	57.522	MGP_BALBcJ_G0029564	Rbm47	88	58.451
MGP_BALBcJ_G0035078	Syncrip	58	52.308	MGP_BALBcJ_G0025013	A1cf	52	53.398
MGP_BALBcJ_G0035078	Syncrip	99	79.206	MGP_BALBcJ_G0028948	-	100	81.733