EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_BALBcJ_G0035205 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_balbcj
Status: putative
Strand: Plus strand
Length: 10532 bases
Position: chr9:104035383-104045914
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_BALBcJ_P0094146	KH_1	PF00013.29	3.4e-50	1	3
MGP_BALBcJ_P0094146	KH_1	PF00013.29	3.4e-50	2	3
MGP_BALBcJ_P0094146	KH_1	PF00013.29	3.4e-50	3	3
MGP_BALBcJ_P0094148	KH_1	PF00013.29	2.7e-32	1	2
MGP_BALBcJ_P0094148	KH_1	PF00013.29	2.7e-32	2	2
MGP_BALBcJ_P0094155	KH_1	PF00013.29	1.5e-21	1	1
MGP_BALBcJ_P0094143	KH_1	PF00013.29	1.3e-18	1	1
MGP_BALBcJ_P0094150	KH_1	PF00013.29	2.3e-15	1	1
MGP_BALBcJ_P0094152	KH_1	PF00013.29	1.2e-13	1	1
MGP_BALBcJ_P0094157	KH_1	PF00013.29	5.3e-09	1	1
MGP_BALBcJ_P0094148	KH_2	PF07650.17	8.3e-12	1	1
MGP_BALBcJ_P0094143	KH_2	PF07650.17	2.3e-06	1	1
MGP_BALBcJ_P0094150	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_BALBcJ_T0094147	-	378	-	-	- (aa)	-	-
MGP_BALBcJ_T0094146	-	1987	-	MGP_BALBcJ_P0094146	403 (aa)	-	-
MGP_BALBcJ_T0094145	-	610	-	-	- (aa)	-	-
MGP_BALBcJ_T0094144	-	387	-	-	- (aa)	-	-
MGP_BALBcJ_T0094143	-	651	XM_006511779	MGP_BALBcJ_P0094143	119 (aa)	XP_006511842	A0A087WP16
MGP_BALBcJ_T0094151	-	253	-	-	- (aa)	-	-
MGP_BALBcJ_T0094152	-	232	-	MGP_BALBcJ_P0094152	77 (aa)	-	-
MGP_BALBcJ_T0094153	-	846	-	MGP_BALBcJ_P0094153	150 (aa)	-	-
MGP_BALBcJ_T0094158	-	450	-	-	- (aa)	-	-
MGP_BALBcJ_T0094156	-	314	-	-	- (aa)	-	-
MGP_BALBcJ_T0094149	-	477	-	-	- (aa)	-	-
MGP_BALBcJ_T0094148	-	893	-	MGP_BALBcJ_P0094148	197 (aa)	-	-
MGP_BALBcJ_T0094155	-	770	-	MGP_BALBcJ_P0094155	168 (aa)	-	-
MGP_BALBcJ_T0094157	-	924	-	MGP_BALBcJ_P0094157	215 (aa)	-	-
MGP_BALBcJ_T0094150	-	752	-	MGP_BALBcJ_P0094150	113 (aa)	-	-
MGP_BALBcJ_T0094154	-	289	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_BALBcJ_G0035205's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_BALBcJ_G0035205's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_BALBcJ_G0035205	Pcbp4	97	67.826	MGP_BALBcJ_G0030957	Pcbp1	98	53.541
MGP_BALBcJ_G0035205	Pcbp4	98	66.321	MGP_BALBcJ_G0022381	Pcbp2	97	59.877
MGP_BALBcJ_G0035205	Pcbp4	76	41.538	MGP_BALBcJ_G0031729	-	50	41.538
MGP_BALBcJ_G0035205	Pcbp4	85	31.731	MGP_BALBcJ_G0022632	Igf2bp2	62	31.111
MGP_BALBcJ_G0035205	Pcbp4	76	32.323	MGP_BALBcJ_G0023908	Khsrp	54	34.091
MGP_BALBcJ_G0035205	Pcbp4	76	41.538	MGP_BALBcJ_G0031730	Nova2	54	41.538
MGP_BALBcJ_G0035205	Pcbp4	86	31.551	MGP_BALBcJ_G0032442	-	77	31.551
MGP_BALBcJ_G0035205	Pcbp4	84	32.039	MGP_BALBcJ_G0018934	Igf2bp1	59	30.597
MGP_BALBcJ_G0035205	Pcbp4	83	36.000	MGP_BALBcJ_G0025560	Fubp3	70	36.000
MGP_BALBcJ_G0035205	Pcbp4	93	70.652	MGP_BALBcJ_G0017327	Pcbp3	85	69.811
MGP_BALBcJ_G0035205	Pcbp4	51	37.363	MGP_BALBcJ_G0019656	Nova1	52	37.363
MGP_BALBcJ_G0035205	Pcbp4	76	33.684	MGP_BALBcJ_G0027959	Fubp1	72	34.524
MGP_BALBcJ_G0035205	Pcbp4	86	33.728	MGP_BALBcJ_G0020583	Hnrnpk	78	32.414