EuRBPDB

Description

Ensembl ID: MGP_C3HHeJ_G0018020 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpab
Alias: 3010025C11Rik|CBF-A|Cbf-a|Cgbfa|Hnrpab|Hnrpab {ECO:0000313|EMBL:EDL33661.1,GN ECO:0000313|MGI:MGI:1330294}|Hnrpab {ECO:0000313|EMBL:EDL33663.1,GN ECO:0000313|MGI:MGI:1330294}
Full Name: heterogeneous nuclear ribonucleoprotein A/B
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 6746 bases
Position: chr11:50495769-50502514
Accession: 1330294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0028694	CBFNT	PF08143.11	3.2e-19	1	1
MGP_C3HHeJ_P0028695	CBFNT	PF08143.11	3.7e-19	1	1
MGP_C3HHeJ_P0028696	CBFNT	PF08143.11	4.2e-19	1	1
MGP_C3HHeJ_P0028694	RRM_1	PF00076.22	6.4e-34	1	2
MGP_C3HHeJ_P0028694	RRM_1	PF00076.22	6.4e-34	2	2
MGP_C3HHeJ_P0028695	RRM_1	PF00076.22	8.4e-34	1	2
MGP_C3HHeJ_P0028695	RRM_1	PF00076.22	8.4e-34	2	2
MGP_C3HHeJ_P0028696	RRM_1	PF00076.22	1e-33	1	2
MGP_C3HHeJ_P0028696	RRM_1	PF00076.22	1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0028696	-	1437	-	MGP_C3HHeJ_P0028696	332 (aa)	-	-
MGP_C3HHeJ_T0028695	-	2013	-	MGP_C3HHeJ_P0028695	311 (aa)	-	-
MGP_C3HHeJ_T0028694	-	2370	-	MGP_C3HHeJ_P0028694	285 (aa)	-	Q99020

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0018020	Hnrnpab	51	33.846	MGP_C3HHeJ_G0019731	Slirp	73	33.846
MGP_C3HHeJ_G0018020	Hnrnpab	79	32.906	MGP_C3HHeJ_G0028831	Tardbp	92	34.437
MGP_C3HHeJ_G0018020	Hnrnpab	65	31.414	MGP_C3HHeJ_G0034585	Celf6	66	32.500
MGP_C3HHeJ_G0018020	Hnrnpab	70	48.039	MGP_C3HHeJ_G0018679	Msi2	100	52.212
MGP_C3HHeJ_G0018020	Hnrnpab	53	33.333	MGP_C3HHeJ_G0033028	Elavl1	50	33.333
MGP_C3HHeJ_G0018020	Hnrnpab	79	72.052	MGP_C3HHeJ_G0029479	Hnrnpd	100	88.000
MGP_C3HHeJ_G0018020	Hnrnpab	57	35.882	MGP_C3HHeJ_G0020376	Hnrnpa0	58	35.882
MGP_C3HHeJ_G0018020	Hnrnpab	67	40.351	MGP_C3HHeJ_G0017255	Dazap1	99	40.588
MGP_C3HHeJ_G0018020	Hnrnpab	64	37.368	MGP_C3HHeJ_G0030429	Hnrnpa2b1	61	38.068
MGP_C3HHeJ_G0018020	Hnrnpab	82	58.419	MGP_C3HHeJ_G0029481	Hnrnpdl	89	57.292
MGP_C3HHeJ_G0018020	Hnrnpab	79	40.800	MGP_C3HHeJ_G0029664	Msi1	58	48.052