EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0021538 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc1
Alias: PABP|Pabp1|PabpI|Pabpl1|ePAB
Full Name: poly(A) binding protein%2C cytoplasmic 1
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 14513 bases
Position: chr15:34584581-34599093
Accession: 1349722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0040504	PABP	PF00658.18	8.8e-33	1	1
MGP_C3HHeJ_P0040503	PABP	PF00658.18	7.5e-32	1	1
MGP_C3HHeJ_P0040503	RRM_5	PF13893.6	2.4e-08	1	2
MGP_C3HHeJ_P0040503	RRM_5	PF13893.6	2.4e-08	2	2
MGP_C3HHeJ_P0040503	RRM_1	PF00076.22	1.4e-90	1	4
MGP_C3HHeJ_P0040503	RRM_1	PF00076.22	1.4e-90	2	4
MGP_C3HHeJ_P0040503	RRM_1	PF00076.22	1.4e-90	3	4
MGP_C3HHeJ_P0040503	RRM_1	PF00076.22	1.4e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0040503	-	2623	XM_011245339	MGP_C3HHeJ_P0040503	636 (aa)	XP_011243641	P29341
MGP_C3HHeJ_T0040505	-	725	-	-	- (aa)	-	-
MGP_C3HHeJ_T0040504	-	489	-	MGP_C3HHeJ_P0040504	117 (aa)	-	-
MGP_C3HHeJ_T0040507	-	866	-	-	- (aa)	-	-
MGP_C3HHeJ_T0040506	-	632	-	-	- (aa)	-	-
MGP_C3HHeJ_T0040509	-	2877	-	-	- (aa)	-	-
MGP_C3HHeJ_T0040508	-	747	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0021538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0021538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0021538	Pabpc1	58	38.068	MGP_C3HHeJ_G0027310	Sf3b4	73	37.500
MGP_C3HHeJ_G0021538	Pabpc1	66	88.889	MGP_C3HHeJ_G0026756	-	73	88.889
MGP_C3HHeJ_G0021538	Pabpc1	58	37.349	MGP_C3HHeJ_G0028138	Elavl2	89	37.349
MGP_C3HHeJ_G0021538	Pabpc1	100	80.346	MGP_C3HHeJ_G0024102	Pabpc2	100	80.346
MGP_C3HHeJ_G0021538	Pabpc1	98	61.635	MGP_C3HHeJ_G0026551	Pabpc1l	99	61.478
MGP_C3HHeJ_G0021538	Pabpc1	99	80.186	MGP_C3HHeJ_G0022870	Pabpc6	99	80.341
MGP_C3HHeJ_G0021538	Pabpc1	98	75.307	MGP_C3HHeJ_G0028436	Pabpc4	100	94.175
MGP_C3HHeJ_G0021538	Pabpc1	57	32.450	MGP_C3HHeJ_G0033028	Elavl1	95	32.450
MGP_C3HHeJ_G0021538	Pabpc1	57	38.095	MGP_C3HHeJ_G0030756	Tia1	87	38.095
MGP_C3HHeJ_G0021538	Pabpc1	58	36.145	MGP_C3HHeJ_G0034155	Elavl3	92	36.145
MGP_C3HHeJ_G0021538	Pabpc1	58	36.145	MGP_C3HHeJ_G0028272	Elavl4	88	36.145
MGP_C3HHeJ_G0021538	Pabpc1	58	64.607	MGP_C3HHeJ_G0035723	Pabpc5	95	64.463
MGP_C3HHeJ_G0021538	Pabpc1	51	34.884	MGP_C3HHeJ_G0025065	Celf2	57	35.714
MGP_C3HHeJ_G0021538	Pabpc1	59	67.493	MGP_C3HHeJ_G0026905	Pabpc4l	97	69.277
MGP_C3HHeJ_G0021538	Pabpc1	58	34.667	MGP_C3HHeJ_G0029695	Rbm19	62	34.667
MGP_C3HHeJ_G0021538	Pabpc1	56	34.783	MGP_C3HHeJ_G0032780	Tial1	94	31.008