EuRBPDB

Description

Ensembl ID: MGP_C3HHeJ_G0023360 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39b
Alias: 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh|Uap56
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 11711 bases
Position: chr17:35097412-35109122
Accession: 99240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0047072	ResIII	PF04851.15	1.5e-07	1	1
MGP_C3HHeJ_P0047073	ResIII	PF04851.15	2.3e-07	1	1
MGP_C3HHeJ_P0047075	ResIII	PF04851.15	2.3e-07	1	1
MGP_C3HHeJ_P0047077	ResIII	PF04851.15	2.3e-07	1	1
MGP_C3HHeJ_P0047072	DEAD	PF00270.29	8e-39	1	1
MGP_C3HHeJ_P0047073	DEAD	PF00270.29	1.2e-38	1	1
MGP_C3HHeJ_P0047075	DEAD	PF00270.29	1.2e-38	1	1
MGP_C3HHeJ_P0047077	DEAD	PF00270.29	1.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0047074	-	1710	-	-	- (aa)	-	-
MGP_C3HHeJ_T0047075	-	2845	-	MGP_C3HHeJ_P0047075	428 (aa)	-	-
MGP_C3HHeJ_T0047076	-	740	-	-	- (aa)	-	-
MGP_C3HHeJ_T0047077	-	1766	-	MGP_C3HHeJ_P0047077	428 (aa)	-	-
MGP_C3HHeJ_T0047072	-	1215	-	MGP_C3HHeJ_P0047072	324 (aa)	-	Q9Z1N5
MGP_C3HHeJ_T0047073	-	1735	-	MGP_C3HHeJ_P0047073	428 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0023360	Ddx39b	63	30.804	MGP_C3HHeJ_G0016682	D1Pas1	57	30.105
MGP_C3HHeJ_G0023360	Ddx39b	60	39.487	MGP_C3HHeJ_G0030839	Gm8994	82	38.667
MGP_C3HHeJ_G0023360	Ddx39b	85	38.356	MGP_C3HHeJ_G0019227	Eif4a3	88	38.356
MGP_C3HHeJ_G0023360	Ddx39b	60	39.487	MGP_C3HHeJ_G0030840	Gm5580	82	38.667
MGP_C3HHeJ_G0023360	Ddx39b	63	30.804	MGP_C3HHeJ_G0035258	Ddx3x	56	30.105
MGP_C3HHeJ_G0023360	Ddx39b	84	32.970	MGP_C3HHeJ_G0026624	Ddx27	54	31.655
MGP_C3HHeJ_G0023360	Ddx39b	88	34.037	MGP_C3HHeJ_G0031116	Ddx47	90	31.926
MGP_C3HHeJ_G0023360	Ddx39b	76	30.606	MGP_C3HHeJ_G0033817	Ddx19b	75	30.606
MGP_C3HHeJ_G0023360	Ddx39b	91	31.308	MGP_C3HHeJ_G0033816	Ddx19a	83	31.308
MGP_C3HHeJ_G0023360	Ddx39b	100	90.888	MGP_C3HHeJ_G0033525	Ddx39	100	90.888
MGP_C3HHeJ_G0023360	Ddx39b	84	31.903	MGP_C3HHeJ_G0034217	Ddx25	82	32.020
MGP_C3HHeJ_G0023360	Ddx39b	86	38.919	MGP_C3HHeJ_G0022409	Eif4a2	90	38.919
MGP_C3HHeJ_G0023360	Ddx39b	86	32.891	MGP_C3HHeJ_G0033388	Ddx49	97	33.046