EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0024102 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc2
Alias: Pabp|Pabp+|Pabp2
Full Name: poly(A) binding protein%2C cytoplasmic 2
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 2586 bases
Position: chr18:38058188-38060773
Accession: 1349723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0049233	PABP	PF00658.18	1.8e-21	1	1
MGP_C3HHeJ_P0049233	RRM_5	PF13893.6	8.4e-10	1	2
MGP_C3HHeJ_P0049233	RRM_5	PF13893.6	8.4e-10	2	2
MGP_C3HHeJ_P0049233	RRM_1	PF00076.22	2.1e-86	1	4
MGP_C3HHeJ_P0049233	RRM_1	PF00076.22	2.1e-86	2	4
MGP_C3HHeJ_P0049233	RRM_1	PF00076.22	2.1e-86	3	4
MGP_C3HHeJ_P0049233	RRM_1	PF00076.22	2.1e-86	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0049233	-	2586	-	MGP_C3HHeJ_P0049233	628 (aa)	-	Q62029

Gene Model

Click here to download MGP_C3HHeJ_G0024102's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0024102's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0024102	Pabpc2	59	34.667	MGP_C3HHeJ_G0029695	Rbm19	70	34.667
MGP_C3HHeJ_G0024102	Pabpc2	61	34.940	MGP_C3HHeJ_G0034155	Elavl3	90	34.940
MGP_C3HHeJ_G0024102	Pabpc2	100	80.346	MGP_C3HHeJ_G0021538	Pabpc1	100	80.346
MGP_C3HHeJ_G0024102	Pabpc2	68	70.122	MGP_C3HHeJ_G0026756	-	75	64.103
MGP_C3HHeJ_G0024102	Pabpc2	62	60.955	MGP_C3HHeJ_G0035723	Pabpc5	96	61.111
MGP_C3HHeJ_G0024102	Pabpc2	50	35.036	MGP_C3HHeJ_G0032780	Tial1	92	32.500
MGP_C3HHeJ_G0024102	Pabpc2	98	56.938	MGP_C3HHeJ_G0026551	Pabpc1l	99	56.938
MGP_C3HHeJ_G0024102	Pabpc2	61	64.167	MGP_C3HHeJ_G0026905	Pabpc4l	95	68.098
MGP_C3HHeJ_G0024102	Pabpc2	57	35.443	MGP_C3HHeJ_G0030756	Tia1	95	33.835
MGP_C3HHeJ_G0024102	Pabpc2	99	65.391	MGP_C3HHeJ_G0028436	Pabpc4	100	89.320
MGP_C3HHeJ_G0024102	Pabpc2	59	36.145	MGP_C3HHeJ_G0028138	Elavl2	89	36.145
MGP_C3HHeJ_G0024102	Pabpc2	99	69.876	MGP_C3HHeJ_G0022870	Pabpc6	99	70.186
MGP_C3HHeJ_G0024102	Pabpc2	59	34.940	MGP_C3HHeJ_G0028272	Elavl4	88	34.940
MGP_C3HHeJ_G0024102	Pabpc2	50	40.541	MGP_C3HHeJ_G0035223	Rbm3	87	42.188
MGP_C3HHeJ_G0024102	Pabpc2	58	36.364	MGP_C3HHeJ_G0027310	Sf3b4	70	35.795