EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0025496 (Gene tree)
Gene ID: -
Gene Symbol: Rbms1
Alias: 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|Mssp|Mssp1|YC1
Full Name: RNA binding motif%2C single stranded interacting protein 1
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 223223 bases
Position: chr2:59732873-59956095
Accession: 1861774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0054629	RRM_1	PF00076.22	1.4e-32	1	2
MGP_C3HHeJ_P0054629	RRM_1	PF00076.22	1.4e-32	2	2
MGP_C3HHeJ_P0054627	RRM_1	PF00076.22	1.7e-32	1	2
MGP_C3HHeJ_P0054627	RRM_1	PF00076.22	1.7e-32	2	2
MGP_C3HHeJ_P0054628	RRM_1	PF00076.22	1.8e-32	1	2
MGP_C3HHeJ_P0054628	RRM_1	PF00076.22	1.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0054627	-	4421	XM_006499940	MGP_C3HHeJ_P0054627	403 (aa)	XP_006500003	Q91W59
MGP_C3HHeJ_T0054634	-	202	-	-	- (aa)	-	-
MGP_C3HHeJ_T0054635	-	123	-	-	- (aa)	-	-
MGP_C3HHeJ_T0054632	-	224	-	-	- (aa)	-	-
MGP_C3HHeJ_T0054633	-	217	-	-	- (aa)	-	-
MGP_C3HHeJ_T0054630	-	644	-	-	- (aa)	-	-
MGP_C3HHeJ_T0054631	-	757	-	-	- (aa)	-	-
MGP_C3HHeJ_T0054629	-	1800	-	MGP_C3HHeJ_P0054629	386 (aa)	-	-
MGP_C3HHeJ_T0054628	-	2537	-	MGP_C3HHeJ_P0054628	417 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0025496's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0025496's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0025496	Rbms1	51	33.645	MGP_C3HHeJ_G0034155	Elavl3	50	36.207
MGP_C3HHeJ_G0025496	Rbms1	53	32.773	MGP_C3HHeJ_G0028272	Elavl4	70	36.458
MGP_C3HHeJ_G0025496	Rbms1	99	66.753	MGP_C3HHeJ_G0017611	Rbms2	86	71.758
MGP_C3HHeJ_G0025496	Rbms1	96	71.538	MGP_C3HHeJ_G0035085	Rbms3	99	80.841
MGP_C3HHeJ_G0025496	Rbms1	51	37.209	MGP_C3HHeJ_G0028138	Elavl2	60	41.558