EuRBPDB

Description

Ensembl ID: MGP_C3HHeJ_G0026478 (Gene tree)
Gene ID: -
Gene Symbol: Rbm39
Alias: 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|Caper|Caper alpha|R75070|Rnpc2|caper
Full Name: RNA binding motif protein 39
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 34165 bases
Position: chr2:159464571-159498735
Accession: 2157953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0058382	RRM_1	PF00076.22	1.2e-41	1	2
MGP_C3HHeJ_P0058382	RRM_1	PF00076.22	1.2e-41	2	2
MGP_C3HHeJ_P0058383	RRM_1	PF00076.22	1.7e-41	1	2
MGP_C3HHeJ_P0058383	RRM_1	PF00076.22	1.7e-41	2	2
MGP_C3HHeJ_P0058384	RRM_1	PF00076.22	1.7e-41	1	2
MGP_C3HHeJ_P0058384	RRM_1	PF00076.22	1.7e-41	2	2
MGP_C3HHeJ_P0058388	RRM_1	PF00076.22	2.2e-22	1	1
MGP_C3HHeJ_P0058389	RRM_1	PF00076.22	9.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0058386	-	2127	-	MGP_C3HHeJ_P0058386	47 (aa)	-	-
MGP_C3HHeJ_T0058405	-	1008	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058387	-	2120	-	MGP_C3HHeJ_P0058387	40 (aa)	-	-
MGP_C3HHeJ_T0058384	-	2711	-	MGP_C3HHeJ_P0058384	524 (aa)	-	-
MGP_C3HHeJ_T0058391	-	546	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058390	-	695	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058393	-	754	-	MGP_C3HHeJ_P0058393	156 (aa)	-	-
MGP_C3HHeJ_T0058392	-	1453	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058395	-	714	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058394	-	497	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058397	-	707	-	MGP_C3HHeJ_P0058397	40 (aa)	-	-
MGP_C3HHeJ_T0058396	-	685	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058399	-	710	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058398	-	593	-	MGP_C3HHeJ_P0058398	39 (aa)	-	-
MGP_C3HHeJ_T0058385	-	2744	-	MGP_C3HHeJ_P0058385	415 (aa)	-	-
MGP_C3HHeJ_T0058404	-	699	-	MGP_C3HHeJ_P0058404	40 (aa)	-	-
MGP_C3HHeJ_T0058401	-	743	-	MGP_C3HHeJ_P0058401	40 (aa)	-	-
MGP_C3HHeJ_T0058400	-	585	-	MGP_C3HHeJ_P0058400	62 (aa)	-	-
MGP_C3HHeJ_T0058403	-	672	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058402	-	667	-	MGP_C3HHeJ_P0058402	38 (aa)	-	-
MGP_C3HHeJ_T0058382	-	2810	XM_006498832	MGP_C3HHeJ_P0058382	530 (aa)	XP_006498895	Q8VH51
MGP_C3HHeJ_T0058383	-	2580	-	MGP_C3HHeJ_P0058383	524 (aa)	-	-
MGP_C3HHeJ_T0058406	-	715	-	-	- (aa)	-	-
MGP_C3HHeJ_T0058388	-	931	-	MGP_C3HHeJ_P0058388	310 (aa)	-	-
MGP_C3HHeJ_T0058389	-	1090	-	MGP_C3HHeJ_P0058389	273 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0026478	Rbm39	52	34.483	MGP_C3HHeJ_G0017255	Dazap1	94	34.483