EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0026905 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein%2C cytoplasmic 4-like
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 6023 bases
Position: chr3:44477036-44483058
Accession: 3643087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0060350	RRM_5	PF13893.6	1.6e-13	1	3
MGP_C3HHeJ_P0060350	RRM_5	PF13893.6	1.6e-13	2	3
MGP_C3HHeJ_P0060350	RRM_5	PF13893.6	1.6e-13	3	3
MGP_C3HHeJ_P0060351	RRM_5	PF13893.6	1.6e-13	1	3
MGP_C3HHeJ_P0060351	RRM_5	PF13893.6	1.6e-13	2	3
MGP_C3HHeJ_P0060351	RRM_5	PF13893.6	1.6e-13	3	3
MGP_C3HHeJ_P0060350	RRM_1	PF00076.22	4.7e-83	1	4
MGP_C3HHeJ_P0060350	RRM_1	PF00076.22	4.7e-83	2	4
MGP_C3HHeJ_P0060350	RRM_1	PF00076.22	4.7e-83	3	4
MGP_C3HHeJ_P0060350	RRM_1	PF00076.22	4.7e-83	4	4
MGP_C3HHeJ_P0060351	RRM_1	PF00076.22	4.7e-83	1	4
MGP_C3HHeJ_P0060351	RRM_1	PF00076.22	4.7e-83	2	4
MGP_C3HHeJ_P0060351	RRM_1	PF00076.22	4.7e-83	3	4
MGP_C3HHeJ_P0060351	RRM_1	PF00076.22	4.7e-83	4	4
MGP_C3HHeJ_P0060352	RRM_1	PF00076.22	1.8e-40	1	2
MGP_C3HHeJ_P0060352	RRM_1	PF00076.22	1.8e-40	2	2
MGP_C3HHeJ_P0060353	RRM_1	PF00076.22	1.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0060352	-	723	-	MGP_C3HHeJ_P0060352	172 (aa)	-	-
MGP_C3HHeJ_T0060353	-	467	-	MGP_C3HHeJ_P0060353	50 (aa)	-	-
MGP_C3HHeJ_T0060350	-	5252	XM_006500774	MGP_C3HHeJ_P0060350	370 (aa)	XP_006500837	A0A0A6YWT2
MGP_C3HHeJ_T0060351	-	5218	-	MGP_C3HHeJ_P0060351	370 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0026905's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0026905's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0026905	Pabpc4l	83	34.286	MGP_C3HHeJ_G0035223	Rbm3	90	35.385
MGP_C3HHeJ_G0026905	Pabpc4l	94	33.333	MGP_C3HHeJ_G0032780	Tial1	99	31.618
MGP_C3HHeJ_G0026905	Pabpc4l	98	70.552	MGP_C3HHeJ_G0028436	Pabpc4	100	69.000
MGP_C3HHeJ_G0026905	Pabpc4l	96	36.145	MGP_C3HHeJ_G0034155	Elavl3	90	36.145
MGP_C3HHeJ_G0026905	Pabpc4l	96	30.065	MGP_C3HHeJ_G0028272	Elavl4	70	35.484
MGP_C3HHeJ_G0026905	Pabpc4l	89	31.875	MGP_C3HHeJ_G0028564	Trnau1ap	88	34.211
MGP_C3HHeJ_G0026905	Pabpc4l	65	34.211	MGP_C3HHeJ_G0025858	Celf1	57	37.879
MGP_C3HHeJ_G0026905	Pabpc4l	96	34.940	MGP_C3HHeJ_G0028138	Elavl2	89	34.940
MGP_C3HHeJ_G0026905	Pabpc4l	95	30.539	MGP_C3HHeJ_G0030756	Tia1	95	30.000
MGP_C3HHeJ_G0026905	Pabpc4l	97	69.277	MGP_C3HHeJ_G0021538	Pabpc1	59	67.493
MGP_C3HHeJ_G0026905	Pabpc4l	94	30.464	MGP_C3HHeJ_G0033028	Elavl1	91	30.464
MGP_C3HHeJ_G0026905	Pabpc4l	95	60.736	MGP_C3HHeJ_G0026551	Pabpc1l	59	60.736
MGP_C3HHeJ_G0026905	Pabpc4l	98	64.497	MGP_C3HHeJ_G0022870	Pabpc6	58	64.497
MGP_C3HHeJ_G0026905	Pabpc4l	97	57.865	MGP_C3HHeJ_G0035723	Pabpc5	96	57.967
MGP_C3HHeJ_G0026905	Pabpc4l	95	68.098	MGP_C3HHeJ_G0024102	Pabpc2	61	64.167