EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0027310 (Gene tree)
Gene ID: -
Gene Symbol: Sf3b4
Alias: 49kDa|SF3b49|SF3b50|Sap49
Full Name: splicing factor 3b%2C subunit 4
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 7296 bases
Position: chr3:96424254-96431549
Accession: 109580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0062184	RRM_1	PF00076.22	2.7e-27	1	2
MGP_C3HHeJ_P0062184	RRM_1	PF00076.22	2.7e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0062185	-	437	-	-	- (aa)	-	-
MGP_C3HHeJ_T0062184	-	1794	-	MGP_C3HHeJ_P0062184	383 (aa)	-	Q8QZY9

Gene Model

Click here to download MGP_C3HHeJ_G0027310's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0027310's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0027310	Sf3b4	61	32.022	MGP_C3HHeJ_G0026551	Pabpc1l	60	32.571
MGP_C3HHeJ_G0027310	Sf3b4	70	35.795	MGP_C3HHeJ_G0024102	Pabpc2	58	36.364
MGP_C3HHeJ_G0027310	Sf3b4	60	39.205	MGP_C3HHeJ_G0028436	Pabpc4	98	45.714
MGP_C3HHeJ_G0027310	Sf3b4	56	37.143	MGP_C3HHeJ_G0022870	Pabpc6	58	36.932
MGP_C3HHeJ_G0027310	Sf3b4	73	37.500	MGP_C3HHeJ_G0021538	Pabpc1	58	38.068