EuRBPDB

Description

Ensembl ID: MGP_C3HHeJ_G0027740 (Gene tree)
Gene ID: -
Gene Symbol: Chd7
Alias: A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis
Full Name: chromodomain helicase DNA binding protein 7
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 183672 bases
Position: chr4:5375729-5559400
Accession: 2444748
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0064272	ResIII	PF04851.15	4.5e-06	1	1
MGP_C3HHeJ_P0064273	ResIII	PF04851.15	4.5e-06	1	1
MGP_C3HHeJ_P0064272	BRK	PF07533.16	4.7e-37	1	2
MGP_C3HHeJ_P0064272	BRK	PF07533.16	4.7e-37	2	2
MGP_C3HHeJ_P0064273	BRK	PF07533.16	4.7e-37	1	2
MGP_C3HHeJ_P0064273	BRK	PF07533.16	4.7e-37	2	2
MGP_C3HHeJ_P0064275	BRK	PF07533.16	1.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0064271	-	2373	-	MGP_C3HHeJ_P0064271	631 (aa)	-	-
MGP_C3HHeJ_T0064270	-	4942	-	-	- (aa)	-	-
MGP_C3HHeJ_T0064273	-	10216	-	MGP_C3HHeJ_P0064273	2986 (aa)	-	-
MGP_C3HHeJ_T0064272	-	9445	-	MGP_C3HHeJ_P0064272	2986 (aa)	-	-
MGP_C3HHeJ_T0064275	-	3463	-	MGP_C3HHeJ_P0064275	941 (aa)	-	-
MGP_C3HHeJ_T0064274	-	458	-	MGP_C3HHeJ_P0064274	19 (aa)	-	-
MGP_C3HHeJ_T0064277	-	741	-	-	- (aa)	-	-
MGP_C3HHeJ_T0064276	-	9959	-	MGP_C3HHeJ_P0064276	2985 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0027740	Chd7	72	64.905	MGP_C3HHeJ_G0026527	Chd6	84	72.837
MGP_C3HHeJ_G0027740	Chd7	94	54.400	MGP_C3HHeJ_G0033612	Chd9	83	69.649