EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0028436 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc4
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 41850 bases
Position: chr4:123171705-123213554
Accession: 2385206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0067285	PABP	PF00658.18	3.3e-31	1	1
MGP_C3HHeJ_P0067282	PABP	PF00658.18	3.4e-31	1	1
MGP_C3HHeJ_P0067281	PABP	PF00658.18	3.5e-31	1	1
MGP_C3HHeJ_P0067284	PABP	PF00658.18	3.8e-31	1	1
MGP_C3HHeJ_P0067285	RRM_5	PF13893.6	8e-09	1	1
MGP_C3HHeJ_P0067281	RRM_5	PF13893.6	9.8e-09	1	1
MGP_C3HHeJ_P0067282	RRM_5	PF13893.6	1e-08	1	1
MGP_C3HHeJ_P0067284	RRM_5	PF13893.6	1.2e-08	1	1
MGP_C3HHeJ_P0067285	RRM_1	PF00076.22	6.1e-90	1	4
MGP_C3HHeJ_P0067285	RRM_1	PF00076.22	6.1e-90	2	4
MGP_C3HHeJ_P0067285	RRM_1	PF00076.22	6.1e-90	3	4
MGP_C3HHeJ_P0067285	RRM_1	PF00076.22	6.1e-90	4	4
MGP_C3HHeJ_P0067281	RRM_1	PF00076.22	6.9e-90	1	4
MGP_C3HHeJ_P0067281	RRM_1	PF00076.22	6.9e-90	2	4
MGP_C3HHeJ_P0067281	RRM_1	PF00076.22	6.9e-90	3	4
MGP_C3HHeJ_P0067281	RRM_1	PF00076.22	6.9e-90	4	4
MGP_C3HHeJ_P0067282	RRM_1	PF00076.22	7.1e-90	1	4
MGP_C3HHeJ_P0067282	RRM_1	PF00076.22	7.1e-90	2	4
MGP_C3HHeJ_P0067282	RRM_1	PF00076.22	7.1e-90	3	4
MGP_C3HHeJ_P0067282	RRM_1	PF00076.22	7.1e-90	4	4
MGP_C3HHeJ_P0067284	RRM_1	PF00076.22	8.6e-90	1	4
MGP_C3HHeJ_P0067284	RRM_1	PF00076.22	8.6e-90	2	4
MGP_C3HHeJ_P0067284	RRM_1	PF00076.22	8.6e-90	3	4
MGP_C3HHeJ_P0067284	RRM_1	PF00076.22	8.6e-90	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0067288	-	1146	-	-	- (aa)	-	-
MGP_C3HHeJ_T0067281	-	3262	-	MGP_C3HHeJ_P0067281	672 (aa)	-	-
MGP_C3HHeJ_T0067280	-	245	-	-	- (aa)	-	-
MGP_C3HHeJ_T0067283	-	2636	-	MGP_C3HHeJ_P0067283	103 (aa)	-	-
MGP_C3HHeJ_T0067282	-	3174	-	MGP_C3HHeJ_P0067282	676 (aa)	-	-
MGP_C3HHeJ_T0067285	-	2823	-	MGP_C3HHeJ_P0067285	656 (aa)	-	-
MGP_C3HHeJ_T0067284	-	3169	-	MGP_C3HHeJ_P0067284	701 (aa)	-	-
MGP_C3HHeJ_T0067287	-	703	-	-	- (aa)	-	-
MGP_C3HHeJ_T0067286	-	2019	-	MGP_C3HHeJ_P0067286	672 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0028436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0028436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0028436	Pabpc4	67	32.394	MGP_C3HHeJ_G0027259	Celf3	69	33.784
MGP_C3HHeJ_G0028436	Pabpc4	100	33.333	MGP_C3HHeJ_G0032780	Tial1	94	30.233
MGP_C3HHeJ_G0028436	Pabpc4	100	33.824	MGP_C3HHeJ_G0034155	Elavl3	92	33.735
MGP_C3HHeJ_G0028436	Pabpc4	100	33.333	MGP_C3HHeJ_G0030756	Tia1	95	33.333
MGP_C3HHeJ_G0028436	Pabpc4	100	70.874	MGP_C3HHeJ_G0035723	Pabpc5	95	65.289
MGP_C3HHeJ_G0028436	Pabpc4	66	34.783	MGP_C3HHeJ_G0015805	Boll	60	34.722
MGP_C3HHeJ_G0028436	Pabpc4	68	31.944	MGP_C3HHeJ_G0025065	Celf2	57	38.372
MGP_C3HHeJ_G0028436	Pabpc4	100	69.000	MGP_C3HHeJ_G0026905	Pabpc4l	98	70.552
MGP_C3HHeJ_G0028436	Pabpc4	98	35.294	MGP_C3HHeJ_G0028272	Elavl4	90	30.625
MGP_C3HHeJ_G0028436	Pabpc4	98	35.294	MGP_C3HHeJ_G0028138	Elavl2	89	34.940
MGP_C3HHeJ_G0028436	Pabpc4	68	34.722	MGP_C3HHeJ_G0035420	Rbmx	77	37.662
MGP_C3HHeJ_G0028436	Pabpc4	77	36.709	MGP_C3HHeJ_G0019219	Rbfox3	67	39.130
MGP_C3HHeJ_G0028436	Pabpc4	52	32.278	MGP_C3HHeJ_G0020376	Hnrnpa0	50	33.113
MGP_C3HHeJ_G0028436	Pabpc4	67	33.803	MGP_C3HHeJ_G0023942	Celf4	57	37.500
MGP_C3HHeJ_G0028436	Pabpc4	67	35.211	MGP_C3HHeJ_G0034585	Celf6	68	37.113
MGP_C3HHeJ_G0028436	Pabpc4	98	45.714	MGP_C3HHeJ_G0027310	Sf3b4	60	39.205
MGP_C3HHeJ_G0028436	Pabpc4	100	94.175	MGP_C3HHeJ_G0021538	Pabpc1	98	75.307
MGP_C3HHeJ_G0028436	Pabpc4	97	80.000	MGP_C3HHeJ_G0026756	-	76	96.296
MGP_C3HHeJ_G0028436	Pabpc4	66	30.882	MGP_C3HHeJ_G0026142	Myef2	56	35.526
MGP_C3HHeJ_G0028436	Pabpc4	100	87.379	MGP_C3HHeJ_G0022870	Pabpc6	99	64.671
MGP_C3HHeJ_G0028436	Pabpc4	100	89.320	MGP_C3HHeJ_G0024102	Pabpc2	99	65.391
MGP_C3HHeJ_G0028436	Pabpc4	100	36.765	MGP_C3HHeJ_G0033028	Elavl1	95	33.553
MGP_C3HHeJ_G0028436	Pabpc4	68	37.500	MGP_C3HHeJ_G0035223	Rbm3	87	40.000
MGP_C3HHeJ_G0028436	Pabpc4	100	78.641	MGP_C3HHeJ_G0026551	Pabpc1l	93	66.452
MGP_C3HHeJ_G0028436	Pabpc4	68	33.333	MGP_C3HHeJ_G0025858	Celf1	70	39.535