EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
Description
Ensembl ID
MGP_C3HHeJ_G0028831 (Gene tree)
Gene ID
-
Gene Symbol
Tardbp
Alias
1190002A23Rik|C85084|TARDBP|TDP-43|Tdp43
Full Name
TAR DNA binding protein
Gene Type
protein_coding
Species
Mus_musculus_c3hhej
Status
putative
Strand
Minus strand
Length
16537 bases
Position
chr4:150583314-150599850
Accession
2387629
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_C3HHeJ_P0068929RRM_1PF00076.221.1e-2612
MGP_C3HHeJ_P0068929RRM_1PF00076.221.1e-2622
MGP_C3HHeJ_P0068914RRM_1PF00076.223.8e-2612
MGP_C3HHeJ_P0068914RRM_1PF00076.223.8e-2622
MGP_C3HHeJ_P0068926RRM_1PF00076.223.8e-2612
MGP_C3HHeJ_P0068926RRM_1PF00076.223.8e-2622
MGP_C3HHeJ_P0068916RRM_1PF00076.224.1e-2612
MGP_C3HHeJ_P0068916RRM_1PF00076.224.1e-2622
MGP_C3HHeJ_P0068928RRM_1PF00076.224.1e-2612
MGP_C3HHeJ_P0068928RRM_1PF00076.224.1e-2622
MGP_C3HHeJ_P0068915RRM_1PF00076.224.9e-2612
MGP_C3HHeJ_P0068915RRM_1PF00076.224.9e-2622
MGP_C3HHeJ_P0068927RRM_1PF00076.224.9e-2612
MGP_C3HHeJ_P0068927RRM_1PF00076.224.9e-2622
MGP_C3HHeJ_P0068913RRM_1PF00076.221.2e-2512
MGP_C3HHeJ_P0068913RRM_1PF00076.221.2e-2522
MGP_C3HHeJ_P0068931RRM_1PF00076.224e-1511
MGP_C3HHeJ_P0068932RRM_1PF00076.224.9e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_C3HHeJ_T0068914-6116-MGP_C3HHeJ_P0068914280 (aa)--
MGP_C3HHeJ_T0068915-6098-MGP_C3HHeJ_P0068915302 (aa)--
MGP_C3HHeJ_T0068916-6134-MGP_C3HHeJ_P0068916286 (aa)--
MGP_C3HHeJ_T0068917-1721-MGP_C3HHeJ_P0068917280 (aa)--
MGP_C3HHeJ_T0068913-6869XM_011250237MGP_C3HHeJ_P0068913414 (aa)XP_011248539Q921F2
MGP_C3HHeJ_T0068921-1954-MGP_C3HHeJ_P0068921280 (aa)--
MGP_C3HHeJ_T0068920-624-MGP_C3HHeJ_P006892070 (aa)--
MGP_C3HHeJ_T0068923-600-MGP_C3HHeJ_P0068923130 (aa)--
MGP_C3HHeJ_T0068922-689-MGP_C3HHeJ_P0068922157 (aa)--
MGP_C3HHeJ_T0068918-731--- (aa)--
MGP_C3HHeJ_T0068919-529-MGP_C3HHeJ_P006891998 (aa)--
MGP_C3HHeJ_T0068927-923-MGP_C3HHeJ_P0068927302 (aa)--
MGP_C3HHeJ_T0068924-1132-MGP_C3HHeJ_P0068924277 (aa)--
MGP_C3HHeJ_T0068928-959-MGP_C3HHeJ_P0068928286 (aa)--
MGP_C3HHeJ_T0068931-818-MGP_C3HHeJ_P0068931243 (aa)--
MGP_C3HHeJ_T0068930-1411-MGP_C3HHeJ_P006893084 (aa)--
MGP_C3HHeJ_T0068933-370--- (aa)--
MGP_C3HHeJ_T0068932-740-MGP_C3HHeJ_P0068932149 (aa)--
MGP_C3HHeJ_T0068926-1044-MGP_C3HHeJ_P0068926280 (aa)--
MGP_C3HHeJ_T0068925-428-MGP_C3HHeJ_P006892573 (aa)--
MGP_C3HHeJ_T0068929-625-MGP_C3HHeJ_P0068929192 (aa)--
Gene Model
Click here to download MGP_C3HHeJ_G0028831's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0028831's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_C3HHeJ_G0028831Tardbp8440.580MGP_C3HHeJ_G0029664Msi16234.021
MGP_C3HHeJ_G0028831Tardbp8231.098MGP_C3HHeJ_G0029481Hnrnpdl6130.000
MGP_C3HHeJ_G0028831Tardbp8038.194MGP_C3HHeJ_G0029479Hnrnpd10064.000
MGP_C3HHeJ_G0028831Tardbp9831.818MGP_C3HHeJ_G0017255Dazap18935.065
MGP_C3HHeJ_G0028831Tardbp9234.437MGP_C3HHeJ_G0018020Hnrnpab7932.906
MGP_C3HHeJ_G0028831Tardbp8431.818MGP_C3HHeJ_G0018679Msi210035.398
MGP_C3HHeJ_G0028831Tardbp6630.256MGP_C3HHeJ_G0030429Hnrnpa2b16530.303

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