EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0029479 (Gene tree)
Gene ID: -
Gene Symbol: Hnrnpd
Alias: Auf1|Hnrpd
Full Name: heterogeneous nuclear ribonucleoprotein D
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 24231 bases
Position: chr5:101200368-101224598
Accession: 101947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0072435	CBFNT	PF08143.11	1.2e-11	1	1
MGP_C3HHeJ_P0072433	CBFNT	PF08143.11	1.3e-11	1	1
MGP_C3HHeJ_P0072434	CBFNT	PF08143.11	1.6e-11	1	1
MGP_C3HHeJ_P0072432	CBFNT	PF08143.11	1.7e-11	1	1
MGP_C3HHeJ_P0072435	RRM_1	PF00076.22	7.4e-36	1	2
MGP_C3HHeJ_P0072435	RRM_1	PF00076.22	7.4e-36	2	2
MGP_C3HHeJ_P0072433	RRM_1	PF00076.22	8.9e-36	1	2
MGP_C3HHeJ_P0072433	RRM_1	PF00076.22	8.9e-36	2	2
MGP_C3HHeJ_P0072434	RRM_1	PF00076.22	1.2e-35	1	2
MGP_C3HHeJ_P0072434	RRM_1	PF00076.22	1.2e-35	2	2
MGP_C3HHeJ_P0072432	RRM_1	PF00076.22	1.4e-35	1	2
MGP_C3HHeJ_P0072432	RRM_1	PF00076.22	1.4e-35	2	2
MGP_C3HHeJ_P0072441	RRM_1	PF00076.22	2.3e-23	1	1
MGP_C3HHeJ_P0072442	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0072432	-	6813	XM_006534735	MGP_C3HHeJ_P0072432	355 (aa)	XP_006534798	Q60668
MGP_C3HHeJ_T0072433	-	2000	-	MGP_C3HHeJ_P0072433	306 (aa)	-	-
MGP_C3HHeJ_T0072434	-	1670	-	MGP_C3HHeJ_P0072434	336 (aa)	-	-
MGP_C3HHeJ_T0072435	-	1537	-	MGP_C3HHeJ_P0072435	287 (aa)	-	-
MGP_C3HHeJ_T0072436	-	1117	-	MGP_C3HHeJ_P0072436	215 (aa)	-	-
MGP_C3HHeJ_T0072437	-	737	-	MGP_C3HHeJ_P0072437	150 (aa)	-	-
MGP_C3HHeJ_T0072438	-	699	-	MGP_C3HHeJ_P0072438	131 (aa)	-	-
MGP_C3HHeJ_T0072439	-	1104	-	MGP_C3HHeJ_P0072439	86 (aa)	-	-
MGP_C3HHeJ_T0072441	-	493	-	MGP_C3HHeJ_P0072441	107 (aa)	-	-
MGP_C3HHeJ_T0072440	-	425	-	-	- (aa)	-	-
MGP_C3HHeJ_T0072442	-	478	-	MGP_C3HHeJ_P0072442	25 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0029479's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0029479's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0029479	Hnrnpd	84	37.363	MGP_C3HHeJ_G0035420	Rbmx	83	43.750
MGP_C3HHeJ_G0029479	Hnrnpd	97	44.545	MGP_C3HHeJ_G0030429	Hnrnpa2b1	72	41.148
MGP_C3HHeJ_G0029479	Hnrnpd	100	37.838	MGP_C3HHeJ_G0020376	Hnrnpa0	86	34.173
MGP_C3HHeJ_G0029479	Hnrnpd	55	35.593	MGP_C3HHeJ_G0030756	Tia1	69	32.308
MGP_C3HHeJ_G0029479	Hnrnpd	100	56.000	MGP_C3HHeJ_G0017255	Dazap1	98	41.935
MGP_C3HHeJ_G0029479	Hnrnpd	71	33.333	MGP_C3HHeJ_G0019731	Slirp	70	33.333
MGP_C3HHeJ_G0029479	Hnrnpd	84	36.559	MGP_C3HHeJ_G0017249	Cirbp	83	38.776
MGP_C3HHeJ_G0029479	Hnrnpd	51	36.364	MGP_C3HHeJ_G0026670	Rbm38	51	36.364
MGP_C3HHeJ_G0029479	Hnrnpd	100	68.000	MGP_C3HHeJ_G0029664	Msi1	59	49.485
MGP_C3HHeJ_G0029479	Hnrnpd	100	80.000	MGP_C3HHeJ_G0029481	Hnrnpdl	89	65.278
MGP_C3HHeJ_G0029479	Hnrnpd	100	88.000	MGP_C3HHeJ_G0018020	Hnrnpab	79	72.052
MGP_C3HHeJ_G0029479	Hnrnpd	100	72.000	MGP_C3HHeJ_G0018679	Msi2	100	53.982
MGP_C3HHeJ_G0029479	Hnrnpd	70	34.667	MGP_C3HHeJ_G0035223	Rbm3	78	37.931
MGP_C3HHeJ_G0029479	Hnrnpd	96	43.119	MGP_C3HHeJ_G0025588	Hnrnpa3	56	38.350
MGP_C3HHeJ_G0029479	Hnrnpd	81	37.500	MGP_C3HHeJ_G0033491	-	50	45.833
MGP_C3HHeJ_G0029479	Hnrnpd	69	35.294	MGP_C3HHeJ_G0015805	Boll	51	34.783
MGP_C3HHeJ_G0029479	Hnrnpd	100	64.000	MGP_C3HHeJ_G0028831	Tardbp	80	38.194
MGP_C3HHeJ_G0029479	Hnrnpd	57	31.884	MGP_C3HHeJ_G0029790	Snrnp35	51	35.484
MGP_C3HHeJ_G0029479	Hnrnpd	70	32.000	MGP_C3HHeJ_G0028138	Elavl2	58	31.169