EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0029542 (Gene tree)
Gene ID: -
Gene Symbol: Gfi1
Alias: AW495828|Gfi-1|Pal-1|Pal1
Full Name: growth factor independent 1
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 9355 bases
Position: chr5:109405333-109414687
Accession: 103170
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0072733	zf-C2H2	PF00096.26	5e-28	1	6
MGP_C3HHeJ_P0072733	zf-C2H2	PF00096.26	5e-28	2	6
MGP_C3HHeJ_P0072733	zf-C2H2	PF00096.26	5e-28	3	6
MGP_C3HHeJ_P0072733	zf-C2H2	PF00096.26	5e-28	4	6
MGP_C3HHeJ_P0072733	zf-C2H2	PF00096.26	5e-28	5	6
MGP_C3HHeJ_P0072733	zf-C2H2	PF00096.26	5e-28	6	6
MGP_C3HHeJ_P0072734	zf-C2H2	PF00096.26	5e-28	1	6
MGP_C3HHeJ_P0072734	zf-C2H2	PF00096.26	5e-28	2	6
MGP_C3HHeJ_P0072734	zf-C2H2	PF00096.26	5e-28	3	6
MGP_C3HHeJ_P0072734	zf-C2H2	PF00096.26	5e-28	4	6
MGP_C3HHeJ_P0072734	zf-C2H2	PF00096.26	5e-28	5	6
MGP_C3HHeJ_P0072734	zf-C2H2	PF00096.26	5e-28	6	6
MGP_C3HHeJ_P0072735	zf-C2H2	PF00096.26	1.5e-27	1	6
MGP_C3HHeJ_P0072735	zf-C2H2	PF00096.26	1.5e-27	2	6
MGP_C3HHeJ_P0072735	zf-C2H2	PF00096.26	1.5e-27	3	6
MGP_C3HHeJ_P0072735	zf-C2H2	PF00096.26	1.5e-27	4	6
MGP_C3HHeJ_P0072735	zf-C2H2	PF00096.26	1.5e-27	5	6
MGP_C3HHeJ_P0072735	zf-C2H2	PF00096.26	1.5e-27	6	6
MGP_C3HHeJ_P0072736	zf-C2H2	PF00096.26	9.4e-25	1	4
MGP_C3HHeJ_P0072736	zf-C2H2	PF00096.26	9.4e-25	2	4
MGP_C3HHeJ_P0072736	zf-C2H2	PF00096.26	9.4e-25	3	4
MGP_C3HHeJ_P0072736	zf-C2H2	PF00096.26	9.4e-25	4	4
MGP_C3HHeJ_P0072736	zf-met	PF12874.7	2.2e-08	1	1
MGP_C3HHeJ_P0072733	zf-met	PF12874.7	2.5e-07	1	1
MGP_C3HHeJ_P0072734	zf-met	PF12874.7	2.5e-07	1	1
MGP_C3HHeJ_P0072735	zf-met	PF12874.7	4.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0072737	-	689	-	MGP_C3HHeJ_P0072737	186 (aa)	-	-
MGP_C3HHeJ_T0072736	-	1482	-	MGP_C3HHeJ_P0072736	135 (aa)	-	-
MGP_C3HHeJ_T0072735	-	2639	-	MGP_C3HHeJ_P0072735	489 (aa)	-	-
MGP_C3HHeJ_T0072734	-	2860	-	MGP_C3HHeJ_P0072734	423 (aa)	-	-
MGP_C3HHeJ_T0072733	-	2648	XM_006534791	MGP_C3HHeJ_P0072733	423 (aa)	XP_006534854	A0A0R4J292

Gene Model

Click here to download MGP_C3HHeJ_G0029542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0029542's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0029542	Gfi1	100	46.739	MGP_C3HHeJ_G0024336	Zfp236	54	46.739
MGP_C3HHeJ_G0029542	Gfi1	100	45.794	MGP_C3HHeJ_G0018006	Zfp454	68	42.262
MGP_C3HHeJ_G0029542	Gfi1	99	44.275	MGP_C3HHeJ_G0032733	-	79	44.444
MGP_C3HHeJ_G0029542	Gfi1	99	45.038	MGP_C3HHeJ_G0032732	E430018J23Rik	60	42.197
MGP_C3HHeJ_G0029542	Gfi1	99	48.507	MGP_C3HHeJ_G0026182	Zfp661	62	48.507
MGP_C3HHeJ_G0029542	Gfi1	100	47.788	MGP_C3HHeJ_G0020445	Rslcan18	71	47.788
MGP_C3HHeJ_G0029542	Gfi1	100	46.018	MGP_C3HHeJ_G0020446	Zfp759	88	46.018
MGP_C3HHeJ_G0029542	Gfi1	100	48.507	MGP_C3HHeJ_G0031693	Zfp420	97	49.194
MGP_C3HHeJ_G0029542	Gfi1	100	42.857	MGP_C3HHeJ_G0022983	Zscan10	77	42.771
MGP_C3HHeJ_G0029542	Gfi1	100	45.238	MGP_C3HHeJ_G0018152	Zfp867	79	43.023
MGP_C3HHeJ_G0029542	Gfi1	100	46.269	MGP_C3HHeJ_G0022955	Zfp51	75	44.828
MGP_C3HHeJ_G0029542	Gfi1	100	45.312	MGP_C3HHeJ_G0022953	Zfp677	79	43.452
MGP_C3HHeJ_G0029542	Gfi1	100	48.276	MGP_C3HHeJ_G0018101	Zfp672	90	48.276
MGP_C3HHeJ_G0029542	Gfi1	100	43.590	MGP_C3HHeJ_G0030551	Zfp637	71	43.590
MGP_C3HHeJ_G0029542	Gfi1	100	39.535	MGP_C3HHeJ_G0033668	Zfp319	93	40.116
MGP_C3HHeJ_G0029542	Gfi1	100	54.321	MGP_C3HHeJ_G0032730	Zfp768	51	45.833
MGP_C3HHeJ_G0029542	Gfi1	99	44.444	MGP_C3HHeJ_G0031282	Zfp784	71	44.444
MGP_C3HHeJ_G0029542	Gfi1	100	47.368	MGP_C3HHeJ_G0026648	Zfp64	70	38.298
MGP_C3HHeJ_G0029542	Gfi1	100	46.094	MGP_C3HHeJ_G0033454	Zfp882	85	46.094
MGP_C3HHeJ_G0029542	Gfi1	100	49.254	MGP_C3HHeJ_G0021752	Zfp251	74	47.024
MGP_C3HHeJ_G0029542	Gfi1	99	45.133	MGP_C3HHeJ_G0030900	Prdm5	74	41.463
MGP_C3HHeJ_G0029542	Gfi1	99	45.714	MGP_C3HHeJ_G0031558	Zfp574	62	43.925
MGP_C3HHeJ_G0029542	Gfi1	100	46.457	MGP_C3HHeJ_G0033828	Zfp1	60	43.478
MGP_C3HHeJ_G0029542	Gfi1	100	50.427	MGP_C3HHeJ_G0031526	Zfp108	65	45.000
MGP_C3HHeJ_G0029542	Gfi1	100	48.031	MGP_C3HHeJ_G0031522	Zfp235	61	46.377
MGP_C3HHeJ_G0029542	Gfi1	100	46.457	MGP_C3HHeJ_G0031528	Zfp94	65	44.970
MGP_C3HHeJ_G0029542	Gfi1	100	48.031	MGP_C3HHeJ_G0031632	Zfp974	89	48.031
MGP_C3HHeJ_G0029542	Gfi1	100	48.031	MGP_C3HHeJ_G0020463	Zfp748	92	48.447
MGP_C3HHeJ_G0029542	Gfi1	99	47.287	MGP_C3HHeJ_G0030394	Repin1	90	47.287
MGP_C3HHeJ_G0029542	Gfi1	100	44.882	MGP_C3HHeJ_G0031823	Zfp715	63	43.210
MGP_C3HHeJ_G0029542	Gfi1	100	49.219	MGP_C3HHeJ_G0029207	Zbtb49	62	51.786
MGP_C3HHeJ_G0029542	Gfi1	100	50.467	MGP_C3HHeJ_G0031815	-	58	48.276
MGP_C3HHeJ_G0029542	Gfi1	100	44.030	MGP_C3HHeJ_G0034162	Zfp872	78	44.030
MGP_C3HHeJ_G0029542	Gfi1	99	47.368	MGP_C3HHeJ_G0031279	Zfp865	66	46.753
MGP_C3HHeJ_G0029542	Gfi1	100	47.863	MGP_C3HHeJ_G0026610	Zfp334	62	47.651