EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0029664 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 28799 bases
Position: chr5:117749215-117778013
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0073340	RRM_1	PF00076.22	6.9e-33	1	2
MGP_C3HHeJ_P0073340	RRM_1	PF00076.22	6.9e-33	2	2
MGP_C3HHeJ_P0073341	RRM_1	PF00076.22	1.6e-28	1	2
MGP_C3HHeJ_P0073341	RRM_1	PF00076.22	1.6e-28	2	2
MGP_C3HHeJ_P0073345	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0073339	-	2626	-	-	- (aa)	-	-
MGP_C3HHeJ_T0073341	-	807	-	MGP_C3HHeJ_P0073341	268 (aa)	-	-
MGP_C3HHeJ_T0073340	-	3003	-	MGP_C3HHeJ_P0073340	362 (aa)	-	-
MGP_C3HHeJ_T0073343	-	806	-	-	- (aa)	-	-
MGP_C3HHeJ_T0073342	-	367	-	-	- (aa)	-	-
MGP_C3HHeJ_T0073345	-	726	-	MGP_C3HHeJ_P0073345	196 (aa)	-	-
MGP_C3HHeJ_T0073344	-	581	-	-	- (aa)	-	-
MGP_C3HHeJ_T0073346	-	599	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0029664's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0029664's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0029664	Msi1	62	34.021	MGP_C3HHeJ_G0028831	Tardbp	84	40.580
MGP_C3HHeJ_G0029664	Msi1	51	38.983	MGP_C3HHeJ_G0017249	Cirbp	87	40.351
MGP_C3HHeJ_G0029664	Msi1	61	51.064	MGP_C3HHeJ_G0026670	Rbm38	66	46.809
MGP_C3HHeJ_G0029664	Msi1	58	48.052	MGP_C3HHeJ_G0018020	Hnrnpab	79	40.800
MGP_C3HHeJ_G0029664	Msi1	58	48.052	MGP_C3HHeJ_G0029481	Hnrnpdl	75	39.676
MGP_C3HHeJ_G0029664	Msi1	99	75.665	MGP_C3HHeJ_G0018679	Msi2	100	90.323
MGP_C3HHeJ_G0029664	Msi1	59	49.485	MGP_C3HHeJ_G0029479	Hnrnpd	100	68.000
MGP_C3HHeJ_G0029664	Msi1	59	36.782	MGP_C3HHeJ_G0025588	Hnrnpa3	66	35.606
MGP_C3HHeJ_G0029664	Msi1	57	42.949	MGP_C3HHeJ_G0020376	Hnrnpa0	59	43.646
MGP_C3HHeJ_G0029664	Msi1	88	42.308	MGP_C3HHeJ_G0017255	Dazap1	98	44.311
MGP_C3HHeJ_G0029664	Msi1	56	41.379	MGP_C3HHeJ_G0032780	Tial1	69	31.469
MGP_C3HHeJ_G0029664	Msi1	61	43.750	MGP_C3HHeJ_G0030429	Hnrnpa2b1	91	41.379