EuRBPDB

Description

RBDs

Transcripts

Gene Model

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0030057 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 15774 bases
Position: chr5:149428262-149444035
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0075476	zf-CCCH	PF00642.24	1.1e-20	1	2
MGP_C3HHeJ_P0075476	zf-CCCH	PF00642.24	1.1e-20	2	2
MGP_C3HHeJ_P0075471	zf-CCCH	PF00642.24	3e-20	1	2
MGP_C3HHeJ_P0075471	zf-CCCH	PF00642.24	3e-20	2	2
MGP_C3HHeJ_P0075474	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_C3HHeJ_P0075474	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_C3HHeJ_P0075473	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_C3HHeJ_P0075473	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_C3HHeJ_P0075472	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_C3HHeJ_P0075472	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_C3HHeJ_P0075472	zf-CCHC	PF00098.23	5.5e-06	1	1
MGP_C3HHeJ_P0075471	zf-CCHC	PF00098.23	6.6e-06	1	1
MGP_C3HHeJ_P0075474	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_C3HHeJ_P0075473	zf-CCHC	PF00098.23	7.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0075475	-	1219	-	MGP_C3HHeJ_P0075475	62 (aa)	-	-
MGP_C3HHeJ_T0075474	-	1405	-	MGP_C3HHeJ_P0075474	244 (aa)	-	-
MGP_C3HHeJ_T0075477	-	2985	-	-	- (aa)	-	-
MGP_C3HHeJ_T0075476	-	850	-	MGP_C3HHeJ_P0075476	207 (aa)	-	-
MGP_C3HHeJ_T0075471	-	1731	XM_006504845	MGP_C3HHeJ_P0075471	243 (aa)	XP_006504908	Q8BQZ5
MGP_C3HHeJ_T0075473	-	1774	-	MGP_C3HHeJ_P0075473	269 (aa)	-	-
MGP_C3HHeJ_T0075472	-	1624	-	MGP_C3HHeJ_P0075472	211 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0030057's gene model file

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0030057	Cpsf4	86	52.358	MGP_C3HHeJ_G0019104	Cpsf4l	82	62.400