EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0030756 (Gene tree)
Gene ID: -
Gene Symbol: Tia1
Alias: 2310050N03Rik|AI256674|TIA-1|Tia|mTIA-1
Full Name: cytotoxic granule-associated RNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 29055 bases
Position: chr6:97685377-97714431
Accession: 107914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0078713	RRM_1	PF00076.22	4.5e-68	1	3
MGP_C3HHeJ_P0078713	RRM_1	PF00076.22	4.5e-68	2	3
MGP_C3HHeJ_P0078713	RRM_1	PF00076.22	4.5e-68	3	3
MGP_C3HHeJ_P0078712	RRM_1	PF00076.22	1.9e-67	1	3
MGP_C3HHeJ_P0078712	RRM_1	PF00076.22	1.9e-67	2	3
MGP_C3HHeJ_P0078712	RRM_1	PF00076.22	1.9e-67	3	3
MGP_C3HHeJ_P0078714	RRM_1	PF00076.22	2.1e-67	1	3
MGP_C3HHeJ_P0078714	RRM_1	PF00076.22	2.1e-67	2	3
MGP_C3HHeJ_P0078714	RRM_1	PF00076.22	2.1e-67	3	3
MGP_C3HHeJ_P0078710	RRM_1	PF00076.22	2.1e-67	1	3
MGP_C3HHeJ_P0078710	RRM_1	PF00076.22	2.1e-67	2	3
MGP_C3HHeJ_P0078710	RRM_1	PF00076.22	2.1e-67	3	3
MGP_C3HHeJ_P0078716	RRM_1	PF00076.22	2.3e-58	1	3
MGP_C3HHeJ_P0078716	RRM_1	PF00076.22	2.3e-58	2	3
MGP_C3HHeJ_P0078716	RRM_1	PF00076.22	2.3e-58	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0078735	-	4420	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078719	-	877	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078718	-	1290	-	MGP_C3HHeJ_P0078718	93 (aa)	-	-
MGP_C3HHeJ_T0078734	-	2664	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078713	-	3107	-	MGP_C3HHeJ_P0078713	377 (aa)	-	-
MGP_C3HHeJ_T0078712	-	3129	-	MGP_C3HHeJ_P0078712	375 (aa)	-	-
MGP_C3HHeJ_T0078711	-	4325	-	MGP_C3HHeJ_P0078711	212 (aa)	-	-
MGP_C3HHeJ_T0078710	-	4476	XM_006505889	MGP_C3HHeJ_P0078710	386 (aa)	XP_006505952	P52912
MGP_C3HHeJ_T0078731	-	864	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078730	-	1867	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078715	-	3854	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078714	-	1789	-	MGP_C3HHeJ_P0078714	385 (aa)	-	-
MGP_C3HHeJ_T0078722	-	750	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078723	-	823	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078720	-	1203	-	MGP_C3HHeJ_P0078720	133 (aa)	-	-
MGP_C3HHeJ_T0078721	-	585	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078726	-	627	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078727	-	797	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078724	-	716	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078725	-	2506	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078717	-	597	-	MGP_C3HHeJ_P0078717	105 (aa)	-	-
MGP_C3HHeJ_T0078728	-	758	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078729	-	706	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078716	-	1444	-	MGP_C3HHeJ_P0078716	285 (aa)	-	-
MGP_C3HHeJ_T0078733	-	612	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078732	-	1178	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078737	-	934	-	-	- (aa)	-	-
MGP_C3HHeJ_T0078736	-	422	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0030756's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0030756's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0030756	Tia1	87	38.095	MGP_C3HHeJ_G0021538	Pabpc1	57	38.095
MGP_C3HHeJ_G0030756	Tia1	89	34.615	MGP_C3HHeJ_G0028138	Elavl2	96	34.615
MGP_C3HHeJ_G0030756	Tia1	96	36.905	MGP_C3HHeJ_G0022870	Pabpc6	58	36.905
MGP_C3HHeJ_G0030756	Tia1	77	35.897	MGP_C3HHeJ_G0033491	-	52	34.043
MGP_C3HHeJ_G0030756	Tia1	60	31.285	MGP_C3HHeJ_G0028564	Trnau1ap	79	30.198
MGP_C3HHeJ_G0030756	Tia1	97	86.992	MGP_C3HHeJ_G0032780	Tial1	100	87.440
MGP_C3HHeJ_G0030756	Tia1	87	38.095	MGP_C3HHeJ_G0026551	Pabpc1l	59	38.095
MGP_C3HHeJ_G0030756	Tia1	83	35.443	MGP_C3HHeJ_G0025065	Celf2	51	35.443
MGP_C3HHeJ_G0030756	Tia1	95	30.000	MGP_C3HHeJ_G0026905	Pabpc4l	95	30.539
MGP_C3HHeJ_G0030756	Tia1	93	38.667	MGP_C3HHeJ_G0027259	Celf3	77	37.805
MGP_C3HHeJ_G0030756	Tia1	95	33.333	MGP_C3HHeJ_G0028436	Pabpc4	100	33.333
MGP_C3HHeJ_G0030756	Tia1	87	32.911	MGP_C3HHeJ_G0023942	Celf4	63	30.682
MGP_C3HHeJ_G0030756	Tia1	77	35.870	MGP_C3HHeJ_G0027328	Rbm8a	54	35.870
MGP_C3HHeJ_G0030756	Tia1	98	31.169	MGP_C3HHeJ_G0034155	Elavl3	90	37.179
MGP_C3HHeJ_G0030756	Tia1	98	32.895	MGP_C3HHeJ_G0028272	Elavl4	94	35.897
MGP_C3HHeJ_G0030756	Tia1	84	34.247	MGP_C3HHeJ_G0035723	Pabpc5	93	33.333
MGP_C3HHeJ_G0030756	Tia1	80	37.778	MGP_C3HHeJ_G0017249	Cirbp	91	35.714
MGP_C3HHeJ_G0030756	Tia1	85	36.000	MGP_C3HHeJ_G0034585	Celf6	62	32.955
MGP_C3HHeJ_G0030756	Tia1	80	34.043	MGP_C3HHeJ_G0035420	Rbmx	98	34.409
MGP_C3HHeJ_G0030756	Tia1	78	36.000	MGP_C3HHeJ_G0022457	Ncbp2	51	36.000
MGP_C3HHeJ_G0030756	Tia1	69	32.308	MGP_C3HHeJ_G0029479	Hnrnpd	55	35.593
MGP_C3HHeJ_G0030756	Tia1	95	33.835	MGP_C3HHeJ_G0024102	Pabpc2	57	35.443
MGP_C3HHeJ_G0030756	Tia1	99	31.579	MGP_C3HHeJ_G0033028	Elavl1	95	32.298
MGP_C3HHeJ_G0030756	Tia1	78	30.667	MGP_C3HHeJ_G0035223	Rbm3	99	35.955