EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0030900 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 166391 bases
Position: chr6:119214901-119381291
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	1	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	2	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	3	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	4	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	5	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	6	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	7	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	8	9
MGP_C3HHeJ_P0079409	zf-C2H2	PF00096.26	5.6e-59	9	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	1	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	2	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	3	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	4	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	5	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	6	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	7	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	8	9
MGP_C3HHeJ_P0079406	zf-C2H2	PF00096.26	1e-58	9	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	1	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	2	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	3	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	4	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	5	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	6	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	7	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	8	9
MGP_C3HHeJ_P0079408	zf-C2H2	PF00096.26	1e-48	9	9
MGP_C3HHeJ_P0079407	zf-C2H2	PF00096.26	8.1e-27	1	5
MGP_C3HHeJ_P0079407	zf-C2H2	PF00096.26	8.1e-27	2	5
MGP_C3HHeJ_P0079407	zf-C2H2	PF00096.26	8.1e-27	3	5
MGP_C3HHeJ_P0079407	zf-C2H2	PF00096.26	8.1e-27	4	5
MGP_C3HHeJ_P0079407	zf-C2H2	PF00096.26	8.1e-27	5	5
MGP_C3HHeJ_P0079409	zf-met	PF12874.7	1.5e-20	1	3
MGP_C3HHeJ_P0079409	zf-met	PF12874.7	1.5e-20	2	3
MGP_C3HHeJ_P0079409	zf-met	PF12874.7	1.5e-20	3	3
MGP_C3HHeJ_P0079406	zf-met	PF12874.7	2.7e-20	1	3
MGP_C3HHeJ_P0079406	zf-met	PF12874.7	2.7e-20	2	3
MGP_C3HHeJ_P0079406	zf-met	PF12874.7	2.7e-20	3	3
MGP_C3HHeJ_P0079408	zf-met	PF12874.7	8.8e-17	1	3
MGP_C3HHeJ_P0079408	zf-met	PF12874.7	8.8e-17	2	3
MGP_C3HHeJ_P0079408	zf-met	PF12874.7	8.8e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0079408	-	1488	-	MGP_C3HHeJ_P0079408	415 (aa)	-	-
MGP_C3HHeJ_T0079409	-	1740	-	MGP_C3HHeJ_P0079409	579 (aa)	-	-
MGP_C3HHeJ_T0079411	-	4168	-	-	- (aa)	-	-
MGP_C3HHeJ_T0079410	-	1904	-	-	- (aa)	-	-
MGP_C3HHeJ_T0079405	-	1920	-	-	- (aa)	-	-
MGP_C3HHeJ_T0079406	-	2155	-	MGP_C3HHeJ_P0079406	599 (aa)	-	-
MGP_C3HHeJ_T0079407	-	984	-	MGP_C3HHeJ_P0079407	221 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0030900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0030900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0030900	Prdm5	74	48.913	MGP_C3HHeJ_G0031528	Zfp94	73	48.913
MGP_C3HHeJ_G0030900	Prdm5	69	47.857	MGP_C3HHeJ_G0031521	Zfp112	68	39.711
MGP_C3HHeJ_G0030900	Prdm5	73	44.286	MGP_C3HHeJ_G0031522	Zfp235	68	39.404
MGP_C3HHeJ_G0030900	Prdm5	73	40.562	MGP_C3HHeJ_G0032730	Zfp768	53	43.571
MGP_C3HHeJ_G0030900	Prdm5	79	36.822	MGP_C3HHeJ_G0032733	-	80	38.095
MGP_C3HHeJ_G0030900	Prdm5	79	40.244	MGP_C3HHeJ_G0029207	Zbtb49	96	45.070
MGP_C3HHeJ_G0030900	Prdm5	74	37.838	MGP_C3HHeJ_G0032732	E430018J23Rik	71	37.838
MGP_C3HHeJ_G0030900	Prdm5	84	36.545	MGP_C3HHeJ_G0018152	Zfp867	94	36.545
MGP_C3HHeJ_G0030900	Prdm5	68	47.826	MGP_C3HHeJ_G0031527	Zfp61	54	41.102
MGP_C3HHeJ_G0030900	Prdm5	68	46.154	MGP_C3HHeJ_G0031526	Zfp108	66	38.411
MGP_C3HHeJ_G0030900	Prdm5	76	40.000	MGP_C3HHeJ_G0018742	Zfp652	50	36.242
MGP_C3HHeJ_G0030900	Prdm5	61	45.045	MGP_C3HHeJ_G0025947	Wt1	55	40.876
MGP_C3HHeJ_G0030900	Prdm5	88	42.857	MGP_C3HHeJ_G0018101	Zfp672	86	44.286
MGP_C3HHeJ_G0030900	Prdm5	93	45.185	MGP_C3HHeJ_G0026610	Zfp334	67	40.000
MGP_C3HHeJ_G0030900	Prdm5	84	36.243	MGP_C3HHeJ_G0020463	Zfp748	92	39.735
MGP_C3HHeJ_G0030900	Prdm5	74	44.928	MGP_C3HHeJ_G0031815	-	62	38.870
MGP_C3HHeJ_G0030900	Prdm5	82	40.076	MGP_C3HHeJ_G0034162	Zfp872	99	40.530
MGP_C3HHeJ_G0030900	Prdm5	84	32.735	MGP_C3HHeJ_G0031279	Zfp865	78	32.895
MGP_C3HHeJ_G0030900	Prdm5	87	46.739	MGP_C3HHeJ_G0024336	Zfp236	77	43.860
MGP_C3HHeJ_G0030900	Prdm5	78	44.444	MGP_C3HHeJ_G0030551	Zfp637	83	46.479
MGP_C3HHeJ_G0030900	Prdm5	74	41.463	MGP_C3HHeJ_G0029542	Gfi1	99	45.133
MGP_C3HHeJ_G0030900	Prdm5	78	34.752	MGP_C3HHeJ_G0033668	Zfp319	88	34.602
MGP_C3HHeJ_G0030900	Prdm5	78	47.826	MGP_C3HHeJ_G0020023	Zkscan4	53	47.826
MGP_C3HHeJ_G0030900	Prdm5	90	35.235	MGP_C3HHeJ_G0022983	Zscan10	88	44.915
MGP_C3HHeJ_G0030900	Prdm5	70	48.315	MGP_C3HHeJ_G0022976	Zfp945	77	48.315
MGP_C3HHeJ_G0030900	Prdm5	72	48.760	MGP_C3HHeJ_G0031823	Zfp715	66	39.333
MGP_C3HHeJ_G0030900	Prdm5	81	42.941	MGP_C3HHeJ_G0026182	Zfp661	65	42.941
MGP_C3HHeJ_G0030900	Prdm5	91	48.387	MGP_C3HHeJ_G0031693	Zfp420	95	41.722
MGP_C3HHeJ_G0030900	Prdm5	84	43.277	MGP_C3HHeJ_G0020445	Rslcan18	71	38.800
MGP_C3HHeJ_G0030900	Prdm5	83	38.014	MGP_C3HHeJ_G0020446	Zfp759	94	38.870
MGP_C3HHeJ_G0030900	Prdm5	67	50.847	MGP_C3HHeJ_G0033828	Zfp1	67	40.167
MGP_C3HHeJ_G0030900	Prdm5	90	42.609	MGP_C3HHeJ_G0033454	Zfp882	94	35.714
MGP_C3HHeJ_G0030900	Prdm5	68	48.544	MGP_C3HHeJ_G0033911	Snai3	55	42.336
MGP_C3HHeJ_G0030900	Prdm5	78	38.389	MGP_C3HHeJ_G0031632	Zfp974	89	38.389
MGP_C3HHeJ_G0030900	Prdm5	91	39.062	MGP_C3HHeJ_G0021752	Zfp251	66	43.005
MGP_C3HHeJ_G0030900	Prdm5	75	34.545	MGP_C3HHeJ_G0026648	Zfp64	69	31.561
MGP_C3HHeJ_G0030900	Prdm5	96	39.683	MGP_C3HHeJ_G0022955	Zfp51	98	39.683
MGP_C3HHeJ_G0030900	Prdm5	95	43.220	MGP_C3HHeJ_G0022953	Zfp677	78	36.027
MGP_C3HHeJ_G0030900	Prdm5	68	42.361	MGP_C3HHeJ_G0030394	Repin1	91	33.016
MGP_C3HHeJ_G0030900	Prdm5	67	46.667	MGP_C3HHeJ_G0031558	Zfp574	85	30.051
MGP_C3HHeJ_G0030900	Prdm5	78	38.571	MGP_C3HHeJ_G0018006	Zfp454	68	38.571