EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0032274 (Gene tree)
Gene ID: -
Gene Symbol: Rab6a
Alias: 2610028L11Rik|AA419671|Rab6|Rab6 {ECO:0000313|EMBL:EDL16462.1,GN ECO:0000313|MGI:MGI:894313}|Rab6 {ECO:0000313|EMBL:EDL16464.1,GN ECO:0000313|MGI:MGI:894313}|Rab6A
Full Name: RAB6A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 34596 bases
Position: chr7:103673942-103708537
Accession: 894313
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0084844	MMR_HSR1	PF01926.23	9.1e-05	1	1
MGP_C3HHeJ_P0084845	MMR_HSR1	PF01926.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0084843	-	2615	-	MGP_C3HHeJ_P0084843	175 (aa)	-	P35279
MGP_C3HHeJ_T0084844	-	3212	-	MGP_C3HHeJ_P0084844	208 (aa)	-	-
MGP_C3HHeJ_T0084845	-	3108	-	MGP_C3HHeJ_P0084845	208 (aa)	-	-
MGP_C3HHeJ_T0084846	-	567	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0032274's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0032274's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0032274	Rab6a	80	38.922	MGP_C3HHeJ_G0023702	Rab31	86	38.922
MGP_C3HHeJ_G0032274	Rab6a	84	36.158	MGP_C3HHeJ_G0023261	Rab11b	72	38.217
MGP_C3HHeJ_G0032274	Rab6a	81	39.053	MGP_C3HHeJ_G0026677	Rab22a	87	39.053
MGP_C3HHeJ_G0032274	Rab6a	93	38.384	MGP_C3HHeJ_G0024427	Rab1b	96	38.384
MGP_C3HHeJ_G0032274	Rab6a	91	38.462	MGP_C3HHeJ_G0027739	Rab2a	89	38.462
MGP_C3HHeJ_G0032274	Rab6a	76	32.500	MGP_C3HHeJ_G0034853	Mras	76	32.500
MGP_C3HHeJ_G0032274	Rab6a	94	35.784	MGP_C3HHeJ_G0026913	Rab33b	86	35.784
MGP_C3HHeJ_G0032274	Rab6a	93	35.000	MGP_C3HHeJ_G0035937	Rab9	96	35.000
MGP_C3HHeJ_G0032274	Rab6a	75	32.911	MGP_C3HHeJ_G0027390	Nras	98	33.557
MGP_C3HHeJ_G0032274	Rab6a	84	35.955	MGP_C3HHeJ_G0034626	Rab11a	84	38.281
MGP_C3HHeJ_G0032274	Rab6a	90	36.458	MGP_C3HHeJ_G0019609	Rab15	91	36.458
MGP_C3HHeJ_G0032274	Rab6a	95	36.634	MGP_C3HHeJ_G0023860	Rab18	94	36.634
MGP_C3HHeJ_G0032274	Rab6a	76	39.873	MGP_C3HHeJ_G0015674	Rab23	66	39.873
MGP_C3HHeJ_G0032274	Rab6a	76	40.252	MGP_C3HHeJ_G0023711	Rab12	55	40.252
MGP_C3HHeJ_G0032274	Rab6a	77	42.857	MGP_C3HHeJ_G0019120	Rab37	75	42.857
MGP_C3HHeJ_G0032274	Rab6a	75	39.623	MGP_C3HHeJ_G0035541	Rab39b	75	39.623
MGP_C3HHeJ_G0032274	Rab6a	98	41.546	MGP_C3HHeJ_G0023612	Rab5a	95	41.546
MGP_C3HHeJ_G0032274	Rab6a	88	31.915	MGP_C3HHeJ_G0021976	Rabl2	83	31.915
MGP_C3HHeJ_G0032274	Rab6a	77	40.828	MGP_C3HHeJ_G0021035	Rab2b	79	43.421
MGP_C3HHeJ_G0032274	Rab6a	75	35.625	MGP_C3HHeJ_G0029053	Rheb	85	35.625
MGP_C3HHeJ_G0032274	Rab6a	100	90.865	MGP_C3HHeJ_G0034876	Rab6b	100	90.865
MGP_C3HHeJ_G0032274	Rab6a	94	36.232	MGP_C3HHeJ_G0025384	Rab14	95	36.232
MGP_C3HHeJ_G0032274	Rab6a	77	42.857	MGP_C3HHeJ_G0032214	Rab30	79	42.857
MGP_C3HHeJ_G0032274	Rab6a	95	37.561	MGP_C3HHeJ_G0035367	Rab33a	86	37.561
MGP_C3HHeJ_G0032274	Rab6a	74	39.610	MGP_C3HHeJ_G0029670	Rab35	89	35.789
MGP_C3HHeJ_G0032274	Rab6a	77	30.769	MGP_C3HHeJ_G0030076	Rasl11a	69	30.769
MGP_C3HHeJ_G0032274	Rab6a	56	30.000	MGP_C3HHeJ_G0018961	Arl4d	58	30.000
MGP_C3HHeJ_G0032274	Rab6a	94	38.384	MGP_C3HHeJ_G0017819	Rab1a	94	38.384
MGP_C3HHeJ_G0032274	Rab6a	88	34.239	MGP_C3HHeJ_G0027115	Rab25	86	34.239
MGP_C3HHeJ_G0032274	Rab6a	85	37.634	MGP_C3HHeJ_G0018521	Rab34	72	37.634
MGP_C3HHeJ_G0032274	Rab6a	94	35.500	MGP_C3HHeJ_G0030726	Rab7	91	47.191
MGP_C3HHeJ_G0032274	Rab6a	84	44.000	MGP_C3HHeJ_G0018918	Rab5c	81	44.000
MGP_C3HHeJ_G0032274	Rab6a	75	32.278	MGP_C3HHeJ_G0031183	Kras	83	32.278
MGP_C3HHeJ_G0032274	Rab6a	79	33.721	MGP_C3HHeJ_G0035785	Rab9b	84	33.721
MGP_C3HHeJ_G0032274	Rab6a	94	36.150	MGP_C3HHeJ_G0017111	Rab36	80	36.150
MGP_C3HHeJ_G0032274	Rab6a	80	45.181	MGP_C3HHeJ_G0017639	Rab5b	77	45.181
MGP_C3HHeJ_G0032274	Rab6a	95	30.151	MGP_C3HHeJ_G0032911	Hras	98	30.151