EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0033525 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 11724 bases
Position: chr8:84269249-84280972
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0089182	ResIII	PF04851.15	3e-05	1	1
MGP_C3HHeJ_P0089185	ResIII	PF04851.15	3e-05	1	1
MGP_C3HHeJ_P0089186	ResIII	PF04851.15	3e-05	1	1
MGP_C3HHeJ_P0089182	DEAD	PF00270.29	4.1e-38	1	1
MGP_C3HHeJ_P0089185	DEAD	PF00270.29	4.1e-38	1	1
MGP_C3HHeJ_P0089186	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0089182	-	1656	XM_006531332	MGP_C3HHeJ_P0089182	427 (aa)	XP_006531395	Q8VDW0
MGP_C3HHeJ_T0089183	-	1927	-	-	- (aa)	-	-
MGP_C3HHeJ_T0089186	-	1793	-	MGP_C3HHeJ_P0089186	427 (aa)	-	-
MGP_C3HHeJ_T0089187	-	754	-	-	- (aa)	-	-
MGP_C3HHeJ_T0089184	-	1551	-	MGP_C3HHeJ_P0089184	208 (aa)	-	-
MGP_C3HHeJ_T0089185	-	3858	-	MGP_C3HHeJ_P0089185	427 (aa)	-	-

Gene Model

Click here to download MGP_C3HHeJ_G0033525's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0033525's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0033525	Ddx39	74	34.969	MGP_C3HHeJ_G0017772	Ddx56	61	32.051
MGP_C3HHeJ_G0033525	Ddx39	86	38.108	MGP_C3HHeJ_G0022409	Eif4a2	90	38.108
MGP_C3HHeJ_G0033525	Ddx39	90	30.095	MGP_C3HHeJ_G0033816	Ddx19a	82	30.095
MGP_C3HHeJ_G0033525	Ddx39	90	30.392	MGP_C3HHeJ_G0035258	Ddx3x	56	31.565
MGP_C3HHeJ_G0033525	Ddx39	76	41.509	MGP_C3HHeJ_G0030840	Gm5580	82	38.667
MGP_C3HHeJ_G0033525	Ddx39	100	90.888	MGP_C3HHeJ_G0023360	Ddx39b	100	90.888
MGP_C3HHeJ_G0033525	Ddx39	76	41.509	MGP_C3HHeJ_G0030839	Gm8994	82	38.667
MGP_C3HHeJ_G0033525	Ddx39	90	34.074	MGP_C3HHeJ_G0027420	Ddx20	50	34.140
MGP_C3HHeJ_G0033525	Ddx39	90	30.392	MGP_C3HHeJ_G0016682	D1Pas1	57	31.565
MGP_C3HHeJ_G0033525	Ddx39	87	33.156	MGP_C3HHeJ_G0033388	Ddx49	97	33.333
MGP_C3HHeJ_G0033525	Ddx39	85	31.183	MGP_C3HHeJ_G0034217	Ddx25	81	31.328
MGP_C3HHeJ_G0033525	Ddx39	86	37.197	MGP_C3HHeJ_G0019227	Eif4a3	89	37.197
MGP_C3HHeJ_G0033525	Ddx39	81	30.028	MGP_C3HHeJ_G0016181	Ddx18	51	30.473
MGP_C3HHeJ_G0033525	Ddx39	89	32.620	MGP_C3HHeJ_G0031116	Ddx47	90	32.095