EuRBPDB

Description

Ensembl ID: MGP_C3HHeJ_G0034790 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 37635 bases
Position: chr9:88699446-88737080
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0093120	RRM_5	PF13893.6	2.5e-06	1	1
MGP_C3HHeJ_P0093123	RRM_5	PF13893.6	3.2e-06	1	1
MGP_C3HHeJ_P0093121	RRM_5	PF13893.6	4.7e-06	1	1
MGP_C3HHeJ_P0093118	RRM_5	PF13893.6	4.8e-06	1	1
MGP_C3HHeJ_P0093124	RRM_5	PF13893.6	6.1e-06	1	1
MGP_C3HHeJ_P0093121	RRM_1	PF00076.22	3e-44	1	3
MGP_C3HHeJ_P0093121	RRM_1	PF00076.22	3e-44	2	3
MGP_C3HHeJ_P0093121	RRM_1	PF00076.22	3e-44	3	3
MGP_C3HHeJ_P0093118	RRM_1	PF00076.22	3e-44	1	3
MGP_C3HHeJ_P0093118	RRM_1	PF00076.22	3e-44	2	3
MGP_C3HHeJ_P0093118	RRM_1	PF00076.22	3e-44	3	3
MGP_C3HHeJ_P0093124	RRM_1	PF00076.22	4.6e-44	1	3
MGP_C3HHeJ_P0093124	RRM_1	PF00076.22	4.6e-44	2	3
MGP_C3HHeJ_P0093124	RRM_1	PF00076.22	4.6e-44	3	3
MGP_C3HHeJ_P0093120	RRM_1	PF00076.22	8.3e-43	1	3
MGP_C3HHeJ_P0093120	RRM_1	PF00076.22	8.3e-43	2	3
MGP_C3HHeJ_P0093120	RRM_1	PF00076.22	8.3e-43	3	3
MGP_C3HHeJ_P0093123	RRM_1	PF00076.22	1.3e-42	1	3
MGP_C3HHeJ_P0093123	RRM_1	PF00076.22	1.3e-42	2	3
MGP_C3HHeJ_P0093123	RRM_1	PF00076.22	1.3e-42	3	3
MGP_C3HHeJ_P0093119	RRM_1	PF00076.22	1.4e-31	1	2
MGP_C3HHeJ_P0093119	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0093118	-	9410	XM_006511293	MGP_C3HHeJ_P0093118	562 (aa)	XP_006511356	Q7TMK9
MGP_C3HHeJ_T0093119	-	3175	-	MGP_C3HHeJ_P0093119	448 (aa)	-	-
MGP_C3HHeJ_T0093128	-	443	-	MGP_C3HHeJ_P0093128	94 (aa)	-	-
MGP_C3HHeJ_T0093123	-	1767	-	MGP_C3HHeJ_P0093123	588 (aa)	-	-
MGP_C3HHeJ_T0093122	-	1925	-	MGP_C3HHeJ_P0093122	67 (aa)	-	-
MGP_C3HHeJ_T0093121	-	3415	-	MGP_C3HHeJ_P0093121	561 (aa)	-	-
MGP_C3HHeJ_T0093120	-	3286	-	MGP_C3HHeJ_P0093120	527 (aa)	-	-
MGP_C3HHeJ_T0093127	-	2385	-	-	- (aa)	-	-
MGP_C3HHeJ_T0093126	-	766	-	MGP_C3HHeJ_P0093126	196 (aa)	-	-
MGP_C3HHeJ_T0093125	-	549	-	-	- (aa)	-	-
MGP_C3HHeJ_T0093124	-	1924	-	MGP_C3HHeJ_P0093124	623 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0034790	Syncrip	75	57.522	MGP_C3HHeJ_G0029287	Rbm47	88	58.451
MGP_C3HHeJ_G0034790	Syncrip	58	52.308	MGP_C3HHeJ_G0024769	A1cf	52	53.398
MGP_C3HHeJ_G0034790	Syncrip	53	54.333	MGP_C3HHeJ_G0027046	Rbm46	63	55.000
MGP_C3HHeJ_G0034790	Syncrip	99	79.841	MGP_C3HHeJ_G0028662	Hnrnpr	99	81.716