EuRBPDB

Description

Ensembl ID: MGP_C3HHeJ_G0035357 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Minus strand
Length: 80563 bases
Position: chrX:43233709-43314271
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0095573	ResIII	PF04851.15	4.3e-12	1	1
MGP_C3HHeJ_P0095572	ResIII	PF04851.15	1.1e-11	1	1
MGP_C3HHeJ_P0095570	ResIII	PF04851.15	1.8e-11	1	1
MGP_C3HHeJ_P0095569	ResIII	PF04851.15	1.8e-11	1	1
MGP_C3HHeJ_P0095571	ResIII	PF04851.15	1.8e-11	1	1
MGP_C3HHeJ_P0095569	DEAD	PF00270.29	1.2e-06	1	1
MGP_C3HHeJ_P0095571	DEAD	PF00270.29	1.2e-06	1	1
MGP_C3HHeJ_P0095570	DEAD	PF00270.29	1.3e-06	1	1
MGP_C3HHeJ_P0095573	DEAD	PF00270.29	2.4e-06	1	1
MGP_C3HHeJ_P0095572	DEAD	PF00270.29	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0095572	-	2304	-	MGP_C3HHeJ_P0095572	768 (aa)	-	-
MGP_C3HHeJ_T0095573	-	1965	-	MGP_C3HHeJ_P0095573	381 (aa)	-	-
MGP_C3HHeJ_T0095570	-	3991	-	MGP_C3HHeJ_P0095570	1062 (aa)	-	-
MGP_C3HHeJ_T0095571	-	4798	-	MGP_C3HHeJ_P0095571	1046 (aa)	-	-
MGP_C3HHeJ_T0095569	-	4024	XM_006541563	MGP_C3HHeJ_P0095569	1046 (aa)	XP_006541626	Q6PGB8
MGP_C3HHeJ_T0095574	-	360	-	MGP_C3HHeJ_P0095574	117 (aa)	-	-
MGP_C3HHeJ_T0095575	-	409	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0035357	Smarca1	93	84.280	MGP_C3HHeJ_G0033504	Smarca5	93	84.280
MGP_C3HHeJ_G0035357	Smarca1	61	32.031	MGP_C3HHeJ_G0028314	Rad54l	66	33.267
MGP_C3HHeJ_G0035357	Smarca1	71	30.490	MGP_C3HHeJ_G0020418	Ercc6l2	82	30.353
MGP_C3HHeJ_G0035357	Smarca1	68	31.661	MGP_C3HHeJ_G0027753	Rad54b	62	32.212
MGP_C3HHeJ_G0035357	Smarca1	75	42.044	MGP_C3HHeJ_G0027345	Chd1l	62	43.419
MGP_C3HHeJ_G0035357	Smarca1	72	45.247	MGP_C3HHeJ_G0024829	Hells	65	47.410