EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C3HHeJ_G0035723 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_c3hhej
Status: putative
Strand: Plus strand
Length: 3740 bases
Position: chrX:117042777-117046516
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C3HHeJ_P0096871	RRM_5	PF13893.6	7.2e-12	1	2
MGP_C3HHeJ_P0096871	RRM_5	PF13893.6	7.2e-12	2	2
MGP_C3HHeJ_P0096872	RRM_5	PF13893.6	7.2e-12	1	2
MGP_C3HHeJ_P0096872	RRM_5	PF13893.6	7.2e-12	2	2
MGP_C3HHeJ_P0096871	RRM_1	PF00076.22	1.1e-77	1	4
MGP_C3HHeJ_P0096871	RRM_1	PF00076.22	1.1e-77	2	4
MGP_C3HHeJ_P0096871	RRM_1	PF00076.22	1.1e-77	3	4
MGP_C3HHeJ_P0096871	RRM_1	PF00076.22	1.1e-77	4	4
MGP_C3HHeJ_P0096872	RRM_1	PF00076.22	1.1e-77	1	4
MGP_C3HHeJ_P0096872	RRM_1	PF00076.22	1.1e-77	2	4
MGP_C3HHeJ_P0096872	RRM_1	PF00076.22	1.1e-77	3	4
MGP_C3HHeJ_P0096872	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C3HHeJ_T0096872	-	2242	-	MGP_C3HHeJ_P0096872	381 (aa)	-	-
MGP_C3HHeJ_T0096871	-	2433	-	MGP_C3HHeJ_P0096871	381 (aa)	-	Q8C7D3

Gene Model

Click here to download MGP_C3HHeJ_G0035723's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C3HHeJ_G0035723's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C3HHeJ_G0035723	Pabpc5	96	61.111	MGP_C3HHeJ_G0024102	Pabpc2	62	60.955
MGP_C3HHeJ_G0035723	Pabpc5	93	33.333	MGP_C3HHeJ_G0030756	Tia1	84	34.247
MGP_C3HHeJ_G0035723	Pabpc5	95	65.289	MGP_C3HHeJ_G0028436	Pabpc4	100	70.874
MGP_C3HHeJ_G0035723	Pabpc5	96	56.944	MGP_C3HHeJ_G0026551	Pabpc1l	64	57.022
MGP_C3HHeJ_G0035723	Pabpc5	95	58.445	MGP_C3HHeJ_G0022870	Pabpc6	59	58.470
MGP_C3HHeJ_G0035723	Pabpc5	96	57.967	MGP_C3HHeJ_G0026905	Pabpc4l	97	57.865
MGP_C3HHeJ_G0035723	Pabpc5	94	37.037	MGP_C3HHeJ_G0028138	Elavl2	89	37.037
MGP_C3HHeJ_G0035723	Pabpc5	95	64.463	MGP_C3HHeJ_G0021538	Pabpc1	58	64.607
MGP_C3HHeJ_G0035723	Pabpc5	63	34.483	MGP_C3HHeJ_G0034585	Celf6	51	34.483