EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0017699 (Gene tree)
Gene ID: -
Gene Symbol: Ddx50
Alias: 4933429B04Rik|8430408E17Rik|GU2|RH-II|RH-II/Gubeta
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 46866 bases
Position: chr10:64269415-64316280
Accession: 2182303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0025904	GUCT	PF08152.12	4.8e-28	1	1
MGP_C57BL6NJ_P0025904	ResIII	PF04851.15	5.9e-10	1	1
MGP_C57BL6NJ_P0025904	DEAD	PF00270.29	1.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0025903	-	2404	XM_006514345	MGP_C57BL6NJ_P0025903	669 (aa)	XP_006514408	Q99MJ9
MGP_C57BL6NJ_T0025904	-	2527	-	MGP_C57BL6NJ_P0025904	734 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0017699's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0017699's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0017699	Ddx50	61	30.047	MGP_C57BL6NJ_G0016816	Ddx18	56	31.282
MGP_C57BL6NJ_G0017699	Ddx50	54	31.383	MGP_C57BL6NJ_G0017321	D1Pas1	56	32.181
MGP_C57BL6NJ_G0017699	Ddx50	51	34.302	MGP_C57BL6NJ_G0019705	Ddx5	70	33.446
MGP_C57BL6NJ_G0017699	Ddx50	53	30.028	MGP_C57BL6NJ_G0031330	Gm5580	81	30.746
MGP_C57BL6NJ_G0017699	Ddx50	53	30.028	MGP_C57BL6NJ_G0031331	Gm8994	81	30.746
MGP_C57BL6NJ_G0017699	Ddx50	53	32.603	MGP_C57BL6NJ_G0020986	Ddx41	57	32.603
MGP_C57BL6NJ_G0017699	Ddx50	53	33.799	MGP_C57BL6NJ_G0035558	Ddx43	54	33.799
MGP_C57BL6NJ_G0017699	Ddx50	55	32.353	MGP_C57BL6NJ_G0019870	Eif4a3	86	32.353
MGP_C57BL6NJ_G0017699	Ddx50	61	30.676	MGP_C57BL6NJ_G0031854	Ddx47	94	30.175
MGP_C57BL6NJ_G0017699	Ddx50	90	66.446	MGP_C57BL6NJ_G0017698	Ddx21	71	64.217
MGP_C57BL6NJ_G0017699	Ddx50	54	33.962	MGP_C57BL6NJ_G0022487	Ddx17	55	33.962
MGP_C57BL6NJ_G0017699	Ddx50	54	31.383	MGP_C57BL6NJ_G0036071	Ddx3x	52	33.239
MGP_C57BL6NJ_G0017699	Ddx50	61	34.272	MGP_C57BL6NJ_G0027329	Ddx27	52	34.129
MGP_C57BL6NJ_G0017699	Ddx50	54	32.258	MGP_C57BL6NJ_G0018937	Eif4a1	86	31.538