EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0017785 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp3
Alias: AlphaCP-3
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 207747 bases
Position: chr10:79734848-79942594
Accession: 1890470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0026296	KH_1	PF00013.29	3e-55	1	3
MGP_C57BL6NJ_P0026296	KH_1	PF00013.29	3e-55	2	3
MGP_C57BL6NJ_P0026296	KH_1	PF00013.29	3e-55	3	3
MGP_C57BL6NJ_P0026293	KH_1	PF00013.29	3e-55	1	3
MGP_C57BL6NJ_P0026293	KH_1	PF00013.29	3e-55	2	3
MGP_C57BL6NJ_P0026293	KH_1	PF00013.29	3e-55	3	3
MGP_C57BL6NJ_P0026295	KH_1	PF00013.29	3e-55	1	3
MGP_C57BL6NJ_P0026295	KH_1	PF00013.29	3e-55	2	3
MGP_C57BL6NJ_P0026295	KH_1	PF00013.29	3e-55	3	3
MGP_C57BL6NJ_P0026298	KH_1	PF00013.29	7.8e-19	1	1
MGP_C57BL6NJ_P0026296	KH_2	PF07650.17	3.9e-15	1	1
MGP_C57BL6NJ_P0026293	KH_2	PF07650.17	3.9e-15	1	1
MGP_C57BL6NJ_P0026295	KH_2	PF07650.17	3.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0026301	-	337	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026300	-	717	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026299	-	944	-	MGP_C57BL6NJ_P0026299	226 (aa)	-	-
MGP_C57BL6NJ_T0026298	-	605	-	MGP_C57BL6NJ_P0026298	160 (aa)	-	-
MGP_C57BL6NJ_T0026293	-	2013	-	MGP_C57BL6NJ_P0026293	371 (aa)	-	-
MGP_C57BL6NJ_T0026292	-	2018	XM_006513916	MGP_C57BL6NJ_P0026292	394 (aa)	XP_006513979	P57722
MGP_C57BL6NJ_T0026295	-	1748	-	MGP_C57BL6NJ_P0026295	371 (aa)	-	-
MGP_C57BL6NJ_T0026294	-	1736	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026297	-	1095	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0026296	-	2544	-	MGP_C57BL6NJ_P0026296	370 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0017785's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0017785's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0017785	Pcbp3	99	65.873	MGP_C57BL6NJ_G0031414	Pcbp1	99	68.033
MGP_C57BL6NJ_G0017785	Pcbp3	85	69.811	MGP_C57BL6NJ_G0035725	-	93	70.652
MGP_C57BL6NJ_G0017785	Pcbp3	79	41.667	MGP_C57BL6NJ_G0021017	Hnrnpk	70	51.316
MGP_C57BL6NJ_G0017785	Pcbp3	66	33.582	MGP_C57BL6NJ_G0019386	Igf2bp1	60	33.333
MGP_C57BL6NJ_G0017785	Pcbp3	86	35.000	MGP_C57BL6NJ_G0031157	Igf2bp3	59	33.813
MGP_C57BL6NJ_G0017785	Pcbp3	85	31.973	MGP_C57BL6NJ_G0026005	Fubp3	77	31.973
MGP_C57BL6NJ_G0017785	Pcbp3	69	50.000	MGP_C57BL6NJ_G0032933	-	58	50.000
MGP_C57BL6NJ_G0017785	Pcbp3	89	36.765	MGP_C57BL6NJ_G0023083	Igf2bp2	62	33.333
MGP_C57BL6NJ_G0017785	Pcbp3	66	31.250	MGP_C57BL6NJ_G0028402	Fubp1	72	33.019
MGP_C57BL6NJ_G0017785	Pcbp3	72	40.351	MGP_C57BL6NJ_G0020103	Nova1	59	40.351
MGP_C57BL6NJ_G0017785	Pcbp3	99	82.143	MGP_C57BL6NJ_G0022830	Pcbp2	99	78.338